Cargando…
P-smoother: efficient PBWT smoothing of large haplotype panels
MOTIVATION: As large haplotype panels become increasingly available, efficient string matching algorithms such as positional Burrows-Wheeler transformation (PBWT) are promising for identifying shared haplotypes. However, recent mutations and genotyping errors create occasional mismatches, presenting...
Autores principales: | Yue, William, Naseri, Ardalan, Wang, Victor, Shakya, Pramesh, Zhang, Shaojie, Zhi, Degui |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9245627/ https://www.ncbi.nlm.nih.gov/pubmed/35785021 http://dx.doi.org/10.1093/bioadv/vbac045 |
Ejemplares similares
-
Syllable-PBWT for space-efficient haplotype long-match query
por: Wang, Victor, et al.
Publicado: (2022) -
Efficient haplotype matching between a query and a panel for genealogical search
por: Naseri, Ardalan, et al.
Publicado: (2019) -
Efficient haplotype matching and storage using the positional Burrows–Wheeler transform (PBWT)
por: Durbin, Richard
Publicado: (2014) -
Exploiting parallelization in positional Burrows–Wheeler transform (PBWT) algorithms for efficient haplotype matching and compression
por: Wertenbroek, Rick, et al.
Publicado: (2023) -
μ- PBWT: a lightweight r-indexing of the PBWT for storing and querying UK Biobank data
por: Cozzi, Davide, et al.
Publicado: (2023)