Cargando…

Multisite learning of high-dimensional heterogeneous data with applications to opioid use disorder study of 15,000 patients across 5 clinical sites

Integrating data across institutions can improve learning efficiency. To integrate data efficiently while protecting privacy, we propose A one-shot, summary-statistics-based, Distributed Algorithm for fitting Penalized (ADAP) regression models across multiple datasets. ADAP utilizes patient-level da...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Xiaokang, Duan, Rui, Luo, Chongliang, Ogdie, Alexis, Moore, Jason H., Kranzler, Henry R., Bian, Jiang, Chen, Yong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9245877/
https://www.ncbi.nlm.nih.gov/pubmed/35773438
http://dx.doi.org/10.1038/s41598-022-14029-9
_version_ 1784738845208608768
author Liu, Xiaokang
Duan, Rui
Luo, Chongliang
Ogdie, Alexis
Moore, Jason H.
Kranzler, Henry R.
Bian, Jiang
Chen, Yong
author_facet Liu, Xiaokang
Duan, Rui
Luo, Chongliang
Ogdie, Alexis
Moore, Jason H.
Kranzler, Henry R.
Bian, Jiang
Chen, Yong
author_sort Liu, Xiaokang
collection PubMed
description Integrating data across institutions can improve learning efficiency. To integrate data efficiently while protecting privacy, we propose A one-shot, summary-statistics-based, Distributed Algorithm for fitting Penalized (ADAP) regression models across multiple datasets. ADAP utilizes patient-level data from a lead site and incorporates the first-order (ADAP1) and second-order gradients (ADAP2) of the objective function from collaborating sites to construct a surrogate objective function at the lead site, where model fitting is then completed with proper regularizations applied. We evaluate the performance of the proposed method using both simulation and a real-world application to study risk factors for opioid use disorder (OUD) using 15,000 patient data from the OneFlorida Clinical Research Consortium. Our results show that ADAP performs nearly the same as the pooled estimator but achieves higher estimation accuracy and better variable selection than the local and average estimators. Moreover, ADAP2 successfully handles heterogeneity in covariate distributions.
format Online
Article
Text
id pubmed-9245877
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-92458772022-07-01 Multisite learning of high-dimensional heterogeneous data with applications to opioid use disorder study of 15,000 patients across 5 clinical sites Liu, Xiaokang Duan, Rui Luo, Chongliang Ogdie, Alexis Moore, Jason H. Kranzler, Henry R. Bian, Jiang Chen, Yong Sci Rep Article Integrating data across institutions can improve learning efficiency. To integrate data efficiently while protecting privacy, we propose A one-shot, summary-statistics-based, Distributed Algorithm for fitting Penalized (ADAP) regression models across multiple datasets. ADAP utilizes patient-level data from a lead site and incorporates the first-order (ADAP1) and second-order gradients (ADAP2) of the objective function from collaborating sites to construct a surrogate objective function at the lead site, where model fitting is then completed with proper regularizations applied. We evaluate the performance of the proposed method using both simulation and a real-world application to study risk factors for opioid use disorder (OUD) using 15,000 patient data from the OneFlorida Clinical Research Consortium. Our results show that ADAP performs nearly the same as the pooled estimator but achieves higher estimation accuracy and better variable selection than the local and average estimators. Moreover, ADAP2 successfully handles heterogeneity in covariate distributions. Nature Publishing Group UK 2022-06-30 /pmc/articles/PMC9245877/ /pubmed/35773438 http://dx.doi.org/10.1038/s41598-022-14029-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Liu, Xiaokang
Duan, Rui
Luo, Chongliang
Ogdie, Alexis
Moore, Jason H.
Kranzler, Henry R.
Bian, Jiang
Chen, Yong
Multisite learning of high-dimensional heterogeneous data with applications to opioid use disorder study of 15,000 patients across 5 clinical sites
title Multisite learning of high-dimensional heterogeneous data with applications to opioid use disorder study of 15,000 patients across 5 clinical sites
title_full Multisite learning of high-dimensional heterogeneous data with applications to opioid use disorder study of 15,000 patients across 5 clinical sites
title_fullStr Multisite learning of high-dimensional heterogeneous data with applications to opioid use disorder study of 15,000 patients across 5 clinical sites
title_full_unstemmed Multisite learning of high-dimensional heterogeneous data with applications to opioid use disorder study of 15,000 patients across 5 clinical sites
title_short Multisite learning of high-dimensional heterogeneous data with applications to opioid use disorder study of 15,000 patients across 5 clinical sites
title_sort multisite learning of high-dimensional heterogeneous data with applications to opioid use disorder study of 15,000 patients across 5 clinical sites
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9245877/
https://www.ncbi.nlm.nih.gov/pubmed/35773438
http://dx.doi.org/10.1038/s41598-022-14029-9
work_keys_str_mv AT liuxiaokang multisitelearningofhighdimensionalheterogeneousdatawithapplicationstoopioidusedisorderstudyof15000patientsacross5clinicalsites
AT duanrui multisitelearningofhighdimensionalheterogeneousdatawithapplicationstoopioidusedisorderstudyof15000patientsacross5clinicalsites
AT luochongliang multisitelearningofhighdimensionalheterogeneousdatawithapplicationstoopioidusedisorderstudyof15000patientsacross5clinicalsites
AT ogdiealexis multisitelearningofhighdimensionalheterogeneousdatawithapplicationstoopioidusedisorderstudyof15000patientsacross5clinicalsites
AT moorejasonh multisitelearningofhighdimensionalheterogeneousdatawithapplicationstoopioidusedisorderstudyof15000patientsacross5clinicalsites
AT kranzlerhenryr multisitelearningofhighdimensionalheterogeneousdatawithapplicationstoopioidusedisorderstudyof15000patientsacross5clinicalsites
AT bianjiang multisitelearningofhighdimensionalheterogeneousdatawithapplicationstoopioidusedisorderstudyof15000patientsacross5clinicalsites
AT chenyong multisitelearningofhighdimensionalheterogeneousdatawithapplicationstoopioidusedisorderstudyof15000patientsacross5clinicalsites