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The complete chloroplast genome sequence of Salix kochiana Trautv. and its phylogenetic analysis
Salix kochiana Trautvetter 1837 is one of the highest value shrubs present in northern China with important economic and ecological benefits. This study revealed the structural characteristics and phylogenetic relationships of chloroplast genes in S. kochiana Trautv. The results showed that the leng...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9245976/ https://www.ncbi.nlm.nih.gov/pubmed/35783067 http://dx.doi.org/10.1080/23802359.2022.2087555 |
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author | Wang, Jing Yu, Zicheng Yao, Xu Wan, Jie Wang, Zhengxuan Li, Xiaoping |
author_facet | Wang, Jing Yu, Zicheng Yao, Xu Wan, Jie Wang, Zhengxuan Li, Xiaoping |
author_sort | Wang, Jing |
collection | PubMed |
description | Salix kochiana Trautvetter 1837 is one of the highest value shrubs present in northern China with important economic and ecological benefits. This study revealed the structural characteristics and phylogenetic relationships of chloroplast genes in S. kochiana Trautv. The results showed that the length of the complete chloroplast genome was 155,657 bp, which was a typical circular double-stranded structure, including an 84,458 bp large single-copy region (LSC), a 16,221 bp small single-copy region (SSC) and a 27,489 bp pair of inverted repeat regions (IRA and IRB). The chloroplast genome contains 48,757 A bases, 28,017 G bases, 49,843 T bases, and 29,040 C bases, with a GC content of 36.66%. Through bioinformatics annotation, a total of 126 genes were found in the chloroplast genome, including 81 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis showed that S. kochiana Trautv. was closely related to S. triandroides. |
format | Online Article Text |
id | pubmed-9245976 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-92459762022-07-01 The complete chloroplast genome sequence of Salix kochiana Trautv. and its phylogenetic analysis Wang, Jing Yu, Zicheng Yao, Xu Wan, Jie Wang, Zhengxuan Li, Xiaoping Mitochondrial DNA B Resour Mitogenome Announcement Salix kochiana Trautvetter 1837 is one of the highest value shrubs present in northern China with important economic and ecological benefits. This study revealed the structural characteristics and phylogenetic relationships of chloroplast genes in S. kochiana Trautv. The results showed that the length of the complete chloroplast genome was 155,657 bp, which was a typical circular double-stranded structure, including an 84,458 bp large single-copy region (LSC), a 16,221 bp small single-copy region (SSC) and a 27,489 bp pair of inverted repeat regions (IRA and IRB). The chloroplast genome contains 48,757 A bases, 28,017 G bases, 49,843 T bases, and 29,040 C bases, with a GC content of 36.66%. Through bioinformatics annotation, a total of 126 genes were found in the chloroplast genome, including 81 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis showed that S. kochiana Trautv. was closely related to S. triandroides. Taylor & Francis 2022-06-23 /pmc/articles/PMC9245976/ /pubmed/35783067 http://dx.doi.org/10.1080/23802359.2022.2087555 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Wang, Jing Yu, Zicheng Yao, Xu Wan, Jie Wang, Zhengxuan Li, Xiaoping The complete chloroplast genome sequence of Salix kochiana Trautv. and its phylogenetic analysis |
title | The complete chloroplast genome sequence of Salix kochiana Trautv. and its phylogenetic analysis |
title_full | The complete chloroplast genome sequence of Salix kochiana Trautv. and its phylogenetic analysis |
title_fullStr | The complete chloroplast genome sequence of Salix kochiana Trautv. and its phylogenetic analysis |
title_full_unstemmed | The complete chloroplast genome sequence of Salix kochiana Trautv. and its phylogenetic analysis |
title_short | The complete chloroplast genome sequence of Salix kochiana Trautv. and its phylogenetic analysis |
title_sort | complete chloroplast genome sequence of salix kochiana trautv. and its phylogenetic analysis |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9245976/ https://www.ncbi.nlm.nih.gov/pubmed/35783067 http://dx.doi.org/10.1080/23802359.2022.2087555 |
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