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The complete plastid genome sequence of Viola selkirkii Pursh ex Goldie (Violaceae)
Viola selkirkii, belonging to the genus Viola, has heart-shaped leaves and pale purple flowers, and it is widely distributed in the Northern Hemisphere, including Europe, North America, and Asia. In this study, the plastid genome of V. selkirkii was sequenced and phylogenetic analysis was performed...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9245995/ https://www.ncbi.nlm.nih.gov/pubmed/35783056 http://dx.doi.org/10.1080/23802359.2022.2090299 |
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author | Go, Ah-reum Cheon, Kyeong-Sik Yoo, Ki-Oug |
author_facet | Go, Ah-reum Cheon, Kyeong-Sik Yoo, Ki-Oug |
author_sort | Go, Ah-reum |
collection | PubMed |
description | Viola selkirkii, belonging to the genus Viola, has heart-shaped leaves and pale purple flowers, and it is widely distributed in the Northern Hemisphere, including Europe, North America, and Asia. In this study, the plastid genome of V. selkirkii was sequenced and phylogenetic analysis was performed on 11 Viola plastid genomes. The length of the plastid genome length of V. selkirkii was 156,774 bp, and it was identified as having a typical quadripartite structure with a large single-copy region (85,930 bp), a small single-copy region (17,982 bp), and two inverted repeat regions (26,431 bp each). A phylogenetic analysis was conducted with 77 protein-coding genes from the complete plastid genomes of 11 Viola and nine Salicaceae species; the complete plastid genome of Erythroxylum novogranatense was used as an outgroup. Viola formed a monophyletic clade, and V. selkirkii was closely related to V. ulleungdoensis. These results contribute to the clear identification of the phylogenetic position of V. selkirkii in Viola. |
format | Online Article Text |
id | pubmed-9245995 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-92459952022-07-01 The complete plastid genome sequence of Viola selkirkii Pursh ex Goldie (Violaceae) Go, Ah-reum Cheon, Kyeong-Sik Yoo, Ki-Oug Mitochondrial DNA B Resour Plastome Announcement Viola selkirkii, belonging to the genus Viola, has heart-shaped leaves and pale purple flowers, and it is widely distributed in the Northern Hemisphere, including Europe, North America, and Asia. In this study, the plastid genome of V. selkirkii was sequenced and phylogenetic analysis was performed on 11 Viola plastid genomes. The length of the plastid genome length of V. selkirkii was 156,774 bp, and it was identified as having a typical quadripartite structure with a large single-copy region (85,930 bp), a small single-copy region (17,982 bp), and two inverted repeat regions (26,431 bp each). A phylogenetic analysis was conducted with 77 protein-coding genes from the complete plastid genomes of 11 Viola and nine Salicaceae species; the complete plastid genome of Erythroxylum novogranatense was used as an outgroup. Viola formed a monophyletic clade, and V. selkirkii was closely related to V. ulleungdoensis. These results contribute to the clear identification of the phylogenetic position of V. selkirkii in Viola. Taylor & Francis 2022-06-28 /pmc/articles/PMC9245995/ /pubmed/35783056 http://dx.doi.org/10.1080/23802359.2022.2090299 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Go, Ah-reum Cheon, Kyeong-Sik Yoo, Ki-Oug The complete plastid genome sequence of Viola selkirkii Pursh ex Goldie (Violaceae) |
title | The complete plastid genome sequence of Viola selkirkii Pursh ex Goldie (Violaceae) |
title_full | The complete plastid genome sequence of Viola selkirkii Pursh ex Goldie (Violaceae) |
title_fullStr | The complete plastid genome sequence of Viola selkirkii Pursh ex Goldie (Violaceae) |
title_full_unstemmed | The complete plastid genome sequence of Viola selkirkii Pursh ex Goldie (Violaceae) |
title_short | The complete plastid genome sequence of Viola selkirkii Pursh ex Goldie (Violaceae) |
title_sort | complete plastid genome sequence of viola selkirkii pursh ex goldie (violaceae) |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9245995/ https://www.ncbi.nlm.nih.gov/pubmed/35783056 http://dx.doi.org/10.1080/23802359.2022.2090299 |
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