Phylogenetic relationship and characterization of the complete chloroplast genome of Laggera crispata, a folk herbal medicine plant in China

Laggera crispata, an herbaceous plant, has been used in Chinese medicines as anti-inflammatory, analgesic, and anti-viral. In this study, the complete chloroplast (cp) genome sequence of L. crispata was first reported. The cp genome of L. crispata is 155522 bp in length, with two inverted repeats (I...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhou, Zhongyu, Pu, Tingting, Duan, Baozhong, Zhang, Manchang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Plastome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9246031/
https://www.ncbi.nlm.nih.gov/pubmed/35783060
http://dx.doi.org/10.1080/23802359.2022.2087553
_version_ 1784738880249921536
author Zhou, Zhongyu
Pu, Tingting
Duan, Baozhong
Zhang, Manchang
author_facet Zhou, Zhongyu
Pu, Tingting
Duan, Baozhong
Zhang, Manchang
author_sort Zhou, Zhongyu
collection PubMed
description Laggera crispata, an herbaceous plant, has been used in Chinese medicines as anti-inflammatory, analgesic, and anti-viral. In this study, the complete chloroplast (cp) genome sequence of L. crispata was first reported. The cp genome of L. crispata is 155522 bp in length, with two inverted repeats (IR) regions of 25042 bp, the large single copy (LSC) region of 84198 bp and the small single copy (SSC) region of 21240 bp. 128 genes were predicted, including 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis suggested that L. crispata is more closely related to Pluchea pteropoda and P. indica with solid bootstrap values belonging to the subfamily Inuleae of Asteraceae.
format Online
Article
Text
id pubmed-9246031
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-92460312022-07-01 Phylogenetic relationship and characterization of the complete chloroplast genome of Laggera crispata, a folk herbal medicine plant in China Zhou, Zhongyu Pu, Tingting Duan, Baozhong Zhang, Manchang Mitochondrial DNA B Resour Plastome Announcement Laggera crispata, an herbaceous plant, has been used in Chinese medicines as anti-inflammatory, analgesic, and anti-viral. In this study, the complete chloroplast (cp) genome sequence of L. crispata was first reported. The cp genome of L. crispata is 155522 bp in length, with two inverted repeats (IR) regions of 25042 bp, the large single copy (LSC) region of 84198 bp and the small single copy (SSC) region of 21240 bp. 128 genes were predicted, including 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis suggested that L. crispata is more closely related to Pluchea pteropoda and P. indica with solid bootstrap values belonging to the subfamily Inuleae of Asteraceae. Taylor & Francis 2022-06-28 /pmc/articles/PMC9246031/ /pubmed/35783060 http://dx.doi.org/10.1080/23802359.2022.2087553 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Zhou, Zhongyu
Pu, Tingting
Duan, Baozhong
Zhang, Manchang
Phylogenetic relationship and characterization of the complete chloroplast genome of Laggera crispata, a folk herbal medicine plant in China
title Phylogenetic relationship and characterization of the complete chloroplast genome of Laggera crispata, a folk herbal medicine plant in China
title_full Phylogenetic relationship and characterization of the complete chloroplast genome of Laggera crispata, a folk herbal medicine plant in China
title_fullStr Phylogenetic relationship and characterization of the complete chloroplast genome of Laggera crispata, a folk herbal medicine plant in China
title_full_unstemmed Phylogenetic relationship and characterization of the complete chloroplast genome of Laggera crispata, a folk herbal medicine plant in China
title_short Phylogenetic relationship and characterization of the complete chloroplast genome of Laggera crispata, a folk herbal medicine plant in China
title_sort phylogenetic relationship and characterization of the complete chloroplast genome of laggera crispata, a folk herbal medicine plant in china
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9246031/
https://www.ncbi.nlm.nih.gov/pubmed/35783060
http://dx.doi.org/10.1080/23802359.2022.2087553
work_keys_str_mv AT zhouzhongyu phylogeneticrelationshipandcharacterizationofthecompletechloroplastgenomeoflaggeracrispataafolkherbalmedicineplantinchina
AT putingting phylogeneticrelationshipandcharacterizationofthecompletechloroplastgenomeoflaggeracrispataafolkherbalmedicineplantinchina
AT duanbaozhong phylogeneticrelationshipandcharacterizationofthecompletechloroplastgenomeoflaggeracrispataafolkherbalmedicineplantinchina
AT zhangmanchang phylogeneticrelationshipandcharacterizationofthecompletechloroplastgenomeoflaggeracrispataafolkherbalmedicineplantinchina

Ejemplares similares