Tree House Explorer: A Novel Genome Browser for Phylogenomics

Tree House Explorer (THEx) is a genome browser that integrates phylogenomic data and genomic annotations into a single interactive platform for combined analysis. THEx allows users to visualize genome-wide variation in evolutionary histories and genetic divergence on a chromosome-by-chromosome basis...

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Detalles Bibliográficos
Autores principales: Harris, Andrew J, Foley, Nicole M, Williams, Tiffani L, Murphy, William J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Resources
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9246335/
https://www.ncbi.nlm.nih.gov/pubmed/35700217
http://dx.doi.org/10.1093/molbev/msac130
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author Harris, Andrew J
Foley, Nicole M
Williams, Tiffani L
Murphy, William J
author_facet Harris, Andrew J
Foley, Nicole M
Williams, Tiffani L
Murphy, William J
author_sort Harris, Andrew J
collection PubMed
description Tree House Explorer (THEx) is a genome browser that integrates phylogenomic data and genomic annotations into a single interactive platform for combined analysis. THEx allows users to visualize genome-wide variation in evolutionary histories and genetic divergence on a chromosome-by-chromosome basis, with continuous sliding window comparisons to gene annotations, recombination rates, and other user-specified, highly customizable feature annotations. THEx provides a new platform for interactive phylogenomic data visualization to analyze and interpret the diverse evolutionary histories woven throughout genomes. Hosted on Conda, THEx integrates seamlessly into new or pre-existing workflows.
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spelling pubmed-92463352022-07-01 Tree House Explorer: A Novel Genome Browser for Phylogenomics Harris, Andrew J Foley, Nicole M Williams, Tiffani L Murphy, William J Mol Biol Evol Resources Tree House Explorer (THEx) is a genome browser that integrates phylogenomic data and genomic annotations into a single interactive platform for combined analysis. THEx allows users to visualize genome-wide variation in evolutionary histories and genetic divergence on a chromosome-by-chromosome basis, with continuous sliding window comparisons to gene annotations, recombination rates, and other user-specified, highly customizable feature annotations. THEx provides a new platform for interactive phylogenomic data visualization to analyze and interpret the diverse evolutionary histories woven throughout genomes. Hosted on Conda, THEx integrates seamlessly into new or pre-existing workflows. Oxford University Press 2022-06-14 /pmc/articles/PMC9246335/ /pubmed/35700217 http://dx.doi.org/10.1093/molbev/msac130 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Resources
Harris, Andrew J
Foley, Nicole M
Williams, Tiffani L
Murphy, William J
Tree House Explorer: A Novel Genome Browser for Phylogenomics
title Tree House Explorer: A Novel Genome Browser for Phylogenomics
title_full Tree House Explorer: A Novel Genome Browser for Phylogenomics
title_fullStr Tree House Explorer: A Novel Genome Browser for Phylogenomics
title_full_unstemmed Tree House Explorer: A Novel Genome Browser for Phylogenomics
title_short Tree House Explorer: A Novel Genome Browser for Phylogenomics
title_sort tree house explorer: a novel genome browser for phylogenomics
topic Resources
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9246335/
https://www.ncbi.nlm.nih.gov/pubmed/35700217
http://dx.doi.org/10.1093/molbev/msac130
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