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Identification of Paxillin as a Prognostic Factor for Glioblastoma via Integrated Bioinformatics Analysis

Glioblastoma (GBM) is the most prevalent and aggressive type of brain tumor in the central nervous system. Clinical outcomes for patients with GBM are unsatisfactory. Here, we aimed to identify novel, reliable prognostic factors for GBM. Cox and interactive analyses were used to identify hub genes f...

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Autores principales: Huang, Zhehao, Wang, Hailiang, Sun, Dongjie, Liu, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9246607/
https://www.ncbi.nlm.nih.gov/pubmed/35782068
http://dx.doi.org/10.1155/2022/7171126
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author Huang, Zhehao
Wang, Hailiang
Sun, Dongjie
Liu, Jun
author_facet Huang, Zhehao
Wang, Hailiang
Sun, Dongjie
Liu, Jun
author_sort Huang, Zhehao
collection PubMed
description Glioblastoma (GBM) is the most prevalent and aggressive type of brain tumor in the central nervous system. Clinical outcomes for patients with GBM are unsatisfactory. Here, we aimed to identify novel, reliable prognostic factors for GBM. Cox and interactive analyses were used to identify hub genes from The Cancer Genome Atlas and the Chinese Glioma Genome Atlas datasets. After validation using various cohorts, survival analysis, meta-analysis, and prognostic analysis were performed. Coexpression and enrichment analyses were performed to elucidate the biological pathways of hub genes involved in GBM. ESTIMATE and CIBERSORT methods were applied to analyze the association of hub genes with the tumor microenvironment (TME). Paxillin (PXN) was identified as a hub gene with a high expression in GBM. PXN expression was negatively correlated with overall survival, progression-free survival, and disease-free survival in patients with GBM. Meta-analysis and Cox analysis revealed that PXN could act as an independent prognostic factor in GBM. In addition, PXN was significantly coexpressed with signal transducer and activator of transcription 3 and transforming growth factor β1 and participated in focal adhesion, extracellular matrix/receptor interactions, and the phosphatidylinositol 3-kinase/AKT signaling pathway. The results of ESTIMATE and CIBERSORT analyses revealed that PXN was implicated in TME alterations, particularly the infiltration of regulatory T cells, activated memory T cells, and activated natural killer cells. PXN may be a reliable prognostic factor for GBM. Further studies are needed to validate these findings.
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spelling pubmed-92466072022-07-01 Identification of Paxillin as a Prognostic Factor for Glioblastoma via Integrated Bioinformatics Analysis Huang, Zhehao Wang, Hailiang Sun, Dongjie Liu, Jun Biomed Res Int Research Article Glioblastoma (GBM) is the most prevalent and aggressive type of brain tumor in the central nervous system. Clinical outcomes for patients with GBM are unsatisfactory. Here, we aimed to identify novel, reliable prognostic factors for GBM. Cox and interactive analyses were used to identify hub genes from The Cancer Genome Atlas and the Chinese Glioma Genome Atlas datasets. After validation using various cohorts, survival analysis, meta-analysis, and prognostic analysis were performed. Coexpression and enrichment analyses were performed to elucidate the biological pathways of hub genes involved in GBM. ESTIMATE and CIBERSORT methods were applied to analyze the association of hub genes with the tumor microenvironment (TME). Paxillin (PXN) was identified as a hub gene with a high expression in GBM. PXN expression was negatively correlated with overall survival, progression-free survival, and disease-free survival in patients with GBM. Meta-analysis and Cox analysis revealed that PXN could act as an independent prognostic factor in GBM. In addition, PXN was significantly coexpressed with signal transducer and activator of transcription 3 and transforming growth factor β1 and participated in focal adhesion, extracellular matrix/receptor interactions, and the phosphatidylinositol 3-kinase/AKT signaling pathway. The results of ESTIMATE and CIBERSORT analyses revealed that PXN was implicated in TME alterations, particularly the infiltration of regulatory T cells, activated memory T cells, and activated natural killer cells. PXN may be a reliable prognostic factor for GBM. Further studies are needed to validate these findings. Hindawi 2022-06-23 /pmc/articles/PMC9246607/ /pubmed/35782068 http://dx.doi.org/10.1155/2022/7171126 Text en Copyright © 2022 Zhehao Huang et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Huang, Zhehao
Wang, Hailiang
Sun, Dongjie
Liu, Jun
Identification of Paxillin as a Prognostic Factor for Glioblastoma via Integrated Bioinformatics Analysis
title Identification of Paxillin as a Prognostic Factor for Glioblastoma via Integrated Bioinformatics Analysis
title_full Identification of Paxillin as a Prognostic Factor for Glioblastoma via Integrated Bioinformatics Analysis
title_fullStr Identification of Paxillin as a Prognostic Factor for Glioblastoma via Integrated Bioinformatics Analysis
title_full_unstemmed Identification of Paxillin as a Prognostic Factor for Glioblastoma via Integrated Bioinformatics Analysis
title_short Identification of Paxillin as a Prognostic Factor for Glioblastoma via Integrated Bioinformatics Analysis
title_sort identification of paxillin as a prognostic factor for glioblastoma via integrated bioinformatics analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9246607/
https://www.ncbi.nlm.nih.gov/pubmed/35782068
http://dx.doi.org/10.1155/2022/7171126
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