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Fundamental and practical aspects of machine learning for the peak picking of biomolecular NMR spectra

Rapid progress in machine learning offers new opportunities for the automated analysis of multidimensional NMR spectra ranging from protein NMR to metabolomics applications. Most recently, it has been demonstrated how deep neural networks (DNN) designed for spectral peak picking are capable of decon...

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Autores principales: Li, Da-Wei, Hansen, Alexandar L., Bruschweiler-Li, Lei, Yuan, Chunhua, Brüschweiler, Rafael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9246764/
https://www.ncbi.nlm.nih.gov/pubmed/35389128
http://dx.doi.org/10.1007/s10858-022-00393-1
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author Li, Da-Wei
Hansen, Alexandar L.
Bruschweiler-Li, Lei
Yuan, Chunhua
Brüschweiler, Rafael
author_facet Li, Da-Wei
Hansen, Alexandar L.
Bruschweiler-Li, Lei
Yuan, Chunhua
Brüschweiler, Rafael
author_sort Li, Da-Wei
collection PubMed
description Rapid progress in machine learning offers new opportunities for the automated analysis of multidimensional NMR spectra ranging from protein NMR to metabolomics applications. Most recently, it has been demonstrated how deep neural networks (DNN) designed for spectral peak picking are capable of deconvoluting highly crowded NMR spectra rivaling the facilities of human experts. Superior DNN-based peak picking is one of a series of critical steps during NMR spectral processing, analysis, and interpretation where machine learning is expected to have a major impact. In this perspective, we lay out some of the unique strengths as well as challenges of machine learning approaches in this new era of automated NMR spectral analysis. Such a discussion seems timely and should help define common goals for the NMR community, the sharing of software tools, standardization of protocols, and calibrate expectations. It will also help prepare for an NMR future where machine learning and artificial intelligence tools will be common place.
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spelling pubmed-92467642022-07-02 Fundamental and practical aspects of machine learning for the peak picking of biomolecular NMR spectra Li, Da-Wei Hansen, Alexandar L. Bruschweiler-Li, Lei Yuan, Chunhua Brüschweiler, Rafael J Biomol NMR Perspective Rapid progress in machine learning offers new opportunities for the automated analysis of multidimensional NMR spectra ranging from protein NMR to metabolomics applications. Most recently, it has been demonstrated how deep neural networks (DNN) designed for spectral peak picking are capable of deconvoluting highly crowded NMR spectra rivaling the facilities of human experts. Superior DNN-based peak picking is one of a series of critical steps during NMR spectral processing, analysis, and interpretation where machine learning is expected to have a major impact. In this perspective, we lay out some of the unique strengths as well as challenges of machine learning approaches in this new era of automated NMR spectral analysis. Such a discussion seems timely and should help define common goals for the NMR community, the sharing of software tools, standardization of protocols, and calibrate expectations. It will also help prepare for an NMR future where machine learning and artificial intelligence tools will be common place. Springer Netherlands 2022-04-07 2022 /pmc/articles/PMC9246764/ /pubmed/35389128 http://dx.doi.org/10.1007/s10858-022-00393-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Perspective
Li, Da-Wei
Hansen, Alexandar L.
Bruschweiler-Li, Lei
Yuan, Chunhua
Brüschweiler, Rafael
Fundamental and practical aspects of machine learning for the peak picking of biomolecular NMR spectra
title Fundamental and practical aspects of machine learning for the peak picking of biomolecular NMR spectra
title_full Fundamental and practical aspects of machine learning for the peak picking of biomolecular NMR spectra
title_fullStr Fundamental and practical aspects of machine learning for the peak picking of biomolecular NMR spectra
title_full_unstemmed Fundamental and practical aspects of machine learning for the peak picking of biomolecular NMR spectra
title_short Fundamental and practical aspects of machine learning for the peak picking of biomolecular NMR spectra
title_sort fundamental and practical aspects of machine learning for the peak picking of biomolecular nmr spectra
topic Perspective
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9246764/
https://www.ncbi.nlm.nih.gov/pubmed/35389128
http://dx.doi.org/10.1007/s10858-022-00393-1
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