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Spectral organ fingerprints for machine learning-based intraoperative tissue classification with hyperspectral imaging in a porcine model

Visual discrimination of tissue during surgery can be challenging since different tissues appear similar to the human eye. Hyperspectral imaging (HSI) removes this limitation by associating each pixel with high-dimensional spectral information. While previous work has shown its general potential to...

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Autores principales: Studier-Fischer, Alexander, Seidlitz, Silvia, Sellner, Jan, Özdemir, Berkin, Wiesenfarth, Manuel, Ayala, Leonardo, Odenthal, Jan, Knödler, Samuel, Kowalewski, Karl Friedrich, Haney, Caelan Max, Camplisson, Isabella, Dietrich, Maximilian, Schmidt, Karsten, Salg, Gabriel Alexander, Kenngott, Hannes Götz, Adler, Tim Julian, Schreck, Nicholas, Kopp-Schneider, Annette, Maier-Hein, Klaus, Maier-Hein, Lena, Müller-Stich, Beat Peter, Nickel, Felix
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9247052/
https://www.ncbi.nlm.nih.gov/pubmed/35773276
http://dx.doi.org/10.1038/s41598-022-15040-w
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author Studier-Fischer, Alexander
Seidlitz, Silvia
Sellner, Jan
Özdemir, Berkin
Wiesenfarth, Manuel
Ayala, Leonardo
Odenthal, Jan
Knödler, Samuel
Kowalewski, Karl Friedrich
Haney, Caelan Max
Camplisson, Isabella
Dietrich, Maximilian
Schmidt, Karsten
Salg, Gabriel Alexander
Kenngott, Hannes Götz
Adler, Tim Julian
Schreck, Nicholas
Kopp-Schneider, Annette
Maier-Hein, Klaus
Maier-Hein, Lena
Müller-Stich, Beat Peter
Nickel, Felix
author_facet Studier-Fischer, Alexander
Seidlitz, Silvia
Sellner, Jan
Özdemir, Berkin
Wiesenfarth, Manuel
Ayala, Leonardo
Odenthal, Jan
Knödler, Samuel
Kowalewski, Karl Friedrich
Haney, Caelan Max
Camplisson, Isabella
Dietrich, Maximilian
Schmidt, Karsten
Salg, Gabriel Alexander
Kenngott, Hannes Götz
Adler, Tim Julian
Schreck, Nicholas
Kopp-Schneider, Annette
Maier-Hein, Klaus
Maier-Hein, Lena
Müller-Stich, Beat Peter
Nickel, Felix
author_sort Studier-Fischer, Alexander
collection PubMed
description Visual discrimination of tissue during surgery can be challenging since different tissues appear similar to the human eye. Hyperspectral imaging (HSI) removes this limitation by associating each pixel with high-dimensional spectral information. While previous work has shown its general potential to discriminate tissue, clinical translation has been limited due to the method’s current lack of robustness and generalizability. Specifically, the scientific community is lacking a comprehensive spectral tissue atlas, and it is unknown whether variability in spectral reflectance is primarily explained by tissue type rather than the recorded individual or specific acquisition conditions. The contribution of this work is threefold: (1) Based on an annotated medical HSI data set (9059 images from 46 pigs), we present a tissue atlas featuring spectral fingerprints of 20 different porcine organs and tissue types. (2) Using the principle of mixed model analysis, we show that the greatest source of variability related to HSI images is the organ under observation. (3) We show that HSI-based fully-automatic tissue differentiation of 20 organ classes with deep neural networks is possible with high accuracy (> 95%). We conclude from our study that automatic tissue discrimination based on HSI data is feasible and could thus aid in intraoperative decisionmaking and pave the way for context-aware computer-assisted surgery systems and autonomous robotics.
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spelling pubmed-92470522022-07-02 Spectral organ fingerprints for machine learning-based intraoperative tissue classification with hyperspectral imaging in a porcine model Studier-Fischer, Alexander Seidlitz, Silvia Sellner, Jan Özdemir, Berkin Wiesenfarth, Manuel Ayala, Leonardo Odenthal, Jan Knödler, Samuel Kowalewski, Karl Friedrich Haney, Caelan Max Camplisson, Isabella Dietrich, Maximilian Schmidt, Karsten Salg, Gabriel Alexander Kenngott, Hannes Götz Adler, Tim Julian Schreck, Nicholas Kopp-Schneider, Annette Maier-Hein, Klaus Maier-Hein, Lena Müller-Stich, Beat Peter Nickel, Felix Sci Rep Article Visual discrimination of tissue during surgery can be challenging since different tissues appear similar to the human eye. Hyperspectral imaging (HSI) removes this limitation by associating each pixel with high-dimensional spectral information. While previous work has shown its general potential to discriminate tissue, clinical translation has been limited due to the method’s current lack of robustness and generalizability. Specifically, the scientific community is lacking a comprehensive spectral tissue atlas, and it is unknown whether variability in spectral reflectance is primarily explained by tissue type rather than the recorded individual or specific acquisition conditions. The contribution of this work is threefold: (1) Based on an annotated medical HSI data set (9059 images from 46 pigs), we present a tissue atlas featuring spectral fingerprints of 20 different porcine organs and tissue types. (2) Using the principle of mixed model analysis, we show that the greatest source of variability related to HSI images is the organ under observation. (3) We show that HSI-based fully-automatic tissue differentiation of 20 organ classes with deep neural networks is possible with high accuracy (> 95%). We conclude from our study that automatic tissue discrimination based on HSI data is feasible and could thus aid in intraoperative decisionmaking and pave the way for context-aware computer-assisted surgery systems and autonomous robotics. Nature Publishing Group UK 2022-06-30 /pmc/articles/PMC9247052/ /pubmed/35773276 http://dx.doi.org/10.1038/s41598-022-15040-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Studier-Fischer, Alexander
Seidlitz, Silvia
Sellner, Jan
Özdemir, Berkin
Wiesenfarth, Manuel
Ayala, Leonardo
Odenthal, Jan
Knödler, Samuel
Kowalewski, Karl Friedrich
Haney, Caelan Max
Camplisson, Isabella
Dietrich, Maximilian
Schmidt, Karsten
Salg, Gabriel Alexander
Kenngott, Hannes Götz
Adler, Tim Julian
Schreck, Nicholas
Kopp-Schneider, Annette
Maier-Hein, Klaus
Maier-Hein, Lena
Müller-Stich, Beat Peter
Nickel, Felix
Spectral organ fingerprints for machine learning-based intraoperative tissue classification with hyperspectral imaging in a porcine model
title Spectral organ fingerprints for machine learning-based intraoperative tissue classification with hyperspectral imaging in a porcine model
title_full Spectral organ fingerprints for machine learning-based intraoperative tissue classification with hyperspectral imaging in a porcine model
title_fullStr Spectral organ fingerprints for machine learning-based intraoperative tissue classification with hyperspectral imaging in a porcine model
title_full_unstemmed Spectral organ fingerprints for machine learning-based intraoperative tissue classification with hyperspectral imaging in a porcine model
title_short Spectral organ fingerprints for machine learning-based intraoperative tissue classification with hyperspectral imaging in a porcine model
title_sort spectral organ fingerprints for machine learning-based intraoperative tissue classification with hyperspectral imaging in a porcine model
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9247052/
https://www.ncbi.nlm.nih.gov/pubmed/35773276
http://dx.doi.org/10.1038/s41598-022-15040-w
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