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Multisite Harmonization of Structural DTI Networks in Children: An A-CAP Study

The analysis of large, multisite neuroimaging datasets provides a promising means for robust characterization of brain networks that can reduce false positives and improve reproducibility. However, the use of different MRI scanners introduces variability to the data. Managing those sources of variab...

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Autores principales: Onicas, Adrian I., Ware, Ashley L., Harris, Ashley D., Beauchamp, Miriam H., Beaulieu, Christian, Craig, William, Doan, Quynh, Freedman, Stephen B., Goodyear, Bradley G., Zemek, Roger, Yeates, Keith Owen, Lebel, Catherine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9247315/
https://www.ncbi.nlm.nih.gov/pubmed/35785336
http://dx.doi.org/10.3389/fneur.2022.850642
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author Onicas, Adrian I.
Ware, Ashley L.
Harris, Ashley D.
Beauchamp, Miriam H.
Beaulieu, Christian
Craig, William
Doan, Quynh
Freedman, Stephen B.
Goodyear, Bradley G.
Zemek, Roger
Yeates, Keith Owen
Lebel, Catherine
author_facet Onicas, Adrian I.
Ware, Ashley L.
Harris, Ashley D.
Beauchamp, Miriam H.
Beaulieu, Christian
Craig, William
Doan, Quynh
Freedman, Stephen B.
Goodyear, Bradley G.
Zemek, Roger
Yeates, Keith Owen
Lebel, Catherine
author_sort Onicas, Adrian I.
collection PubMed
description The analysis of large, multisite neuroimaging datasets provides a promising means for robust characterization of brain networks that can reduce false positives and improve reproducibility. However, the use of different MRI scanners introduces variability to the data. Managing those sources of variability is increasingly important for the generation of accurate group-level inferences. ComBat is one of the most promising tools for multisite (multiscanner) harmonization of structural neuroimaging data, but no study has examined its application to graph theory metrics derived from the structural brain connectome. The present work evaluates the use of ComBat for multisite harmonization in the context of structural network analysis of diffusion-weighted scans from the Advancing Concussion Assessment in Pediatrics (A-CAP) study. Scans were acquired on six different scanners from 484 children aged 8.00–16.99 years [Mean = 12.37 ± 2.34 years; 289 (59.7%) Male] ~10 days following mild traumatic brain injury (n = 313) or orthopedic injury (n = 171). Whole brain deterministic diffusion tensor tractography was conducted and used to construct a 90 x 90 weighted (average fractional anisotropy) adjacency matrix for each scan. ComBat harmonization was applied separately at one of two different stages during data processing, either on the (i) weighted adjacency matrices (matrix harmonization) or (ii) global network metrics derived using unharmonized weighted adjacency matrices (parameter harmonization). Global network metrics based on unharmonized adjacency matrices and each harmonization approach were derived. Robust scanner effects were found for unharmonized metrics. Some scanner effects remained significant for matrix harmonized metrics, but effect sizes were less robust. Parameter harmonized metrics did not differ by scanner. Intraclass correlations (ICC) indicated good to excellent within-scanner consistency between metrics calculated before and after both harmonization approaches. Age correlated with unharmonized network metrics, but was more strongly correlated with network metrics based on both harmonization approaches. Parameter harmonization successfully controlled for scanner variability while preserving network topology and connectivity weights, indicating that harmonization of global network parameters based on unharmonized adjacency matrices may provide optimal results. The current work supports the use of ComBat for removing multiscanner effects on global network topology.
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spelling pubmed-92473152022-07-02 Multisite Harmonization of Structural DTI Networks in Children: An A-CAP Study Onicas, Adrian I. Ware, Ashley L. Harris, Ashley D. Beauchamp, Miriam H. Beaulieu, Christian Craig, William Doan, Quynh Freedman, Stephen B. Goodyear, Bradley G. Zemek, Roger Yeates, Keith Owen Lebel, Catherine Front Neurol Neurology The analysis of large, multisite neuroimaging datasets provides a promising means for robust characterization of brain networks that can reduce false positives and improve reproducibility. However, the use of different MRI scanners introduces variability to the data. Managing those sources of variability is increasingly important for the generation of accurate group-level inferences. ComBat is one of the most promising tools for multisite (multiscanner) harmonization of structural neuroimaging data, but no study has examined its application to graph theory metrics derived from the structural brain connectome. The present work evaluates the use of ComBat for multisite harmonization in the context of structural network analysis of diffusion-weighted scans from the Advancing Concussion Assessment in Pediatrics (A-CAP) study. Scans were acquired on six different scanners from 484 children aged 8.00–16.99 years [Mean = 12.37 ± 2.34 years; 289 (59.7%) Male] ~10 days following mild traumatic brain injury (n = 313) or orthopedic injury (n = 171). Whole brain deterministic diffusion tensor tractography was conducted and used to construct a 90 x 90 weighted (average fractional anisotropy) adjacency matrix for each scan. ComBat harmonization was applied separately at one of two different stages during data processing, either on the (i) weighted adjacency matrices (matrix harmonization) or (ii) global network metrics derived using unharmonized weighted adjacency matrices (parameter harmonization). Global network metrics based on unharmonized adjacency matrices and each harmonization approach were derived. Robust scanner effects were found for unharmonized metrics. Some scanner effects remained significant for matrix harmonized metrics, but effect sizes were less robust. Parameter harmonized metrics did not differ by scanner. Intraclass correlations (ICC) indicated good to excellent within-scanner consistency between metrics calculated before and after both harmonization approaches. Age correlated with unharmonized network metrics, but was more strongly correlated with network metrics based on both harmonization approaches. Parameter harmonization successfully controlled for scanner variability while preserving network topology and connectivity weights, indicating that harmonization of global network parameters based on unharmonized adjacency matrices may provide optimal results. The current work supports the use of ComBat for removing multiscanner effects on global network topology. Frontiers Media S.A. 2022-06-17 /pmc/articles/PMC9247315/ /pubmed/35785336 http://dx.doi.org/10.3389/fneur.2022.850642 Text en Copyright © 2022 Onicas, Ware, Harris, Beauchamp, Beaulieu, Craig, Doan, Freedman, Goodyear, Zemek, Yeates and Lebel. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neurology
Onicas, Adrian I.
Ware, Ashley L.
Harris, Ashley D.
Beauchamp, Miriam H.
Beaulieu, Christian
Craig, William
Doan, Quynh
Freedman, Stephen B.
Goodyear, Bradley G.
Zemek, Roger
Yeates, Keith Owen
Lebel, Catherine
Multisite Harmonization of Structural DTI Networks in Children: An A-CAP Study
title Multisite Harmonization of Structural DTI Networks in Children: An A-CAP Study
title_full Multisite Harmonization of Structural DTI Networks in Children: An A-CAP Study
title_fullStr Multisite Harmonization of Structural DTI Networks in Children: An A-CAP Study
title_full_unstemmed Multisite Harmonization of Structural DTI Networks in Children: An A-CAP Study
title_short Multisite Harmonization of Structural DTI Networks in Children: An A-CAP Study
title_sort multisite harmonization of structural dti networks in children: an a-cap study
topic Neurology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9247315/
https://www.ncbi.nlm.nih.gov/pubmed/35785336
http://dx.doi.org/10.3389/fneur.2022.850642
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