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Fully automated determination of the cervical vertebrae maturation stages using deep learning with directional filters

INTRODUCTION: We aim to apply deep learning to achieve fully automated detection and classification of the Cervical Vertebrae Maturation (CVM) stages. We propose an innovative custom-designed deep Convolutional Neural Network (CNN) with a built-in set of novel directional filters that highlight the...

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Autores principales: Atici, Salih Furkan, Ansari, Rashid, Allareddy, Veerasathpurush, Suhaym, Omar, Cetin, Ahmet Enis, Elnagar, Mohammed H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9249196/
https://www.ncbi.nlm.nih.gov/pubmed/35776715
http://dx.doi.org/10.1371/journal.pone.0269198
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author Atici, Salih Furkan
Ansari, Rashid
Allareddy, Veerasathpurush
Suhaym, Omar
Cetin, Ahmet Enis
Elnagar, Mohammed H.
author_facet Atici, Salih Furkan
Ansari, Rashid
Allareddy, Veerasathpurush
Suhaym, Omar
Cetin, Ahmet Enis
Elnagar, Mohammed H.
author_sort Atici, Salih Furkan
collection PubMed
description INTRODUCTION: We aim to apply deep learning to achieve fully automated detection and classification of the Cervical Vertebrae Maturation (CVM) stages. We propose an innovative custom-designed deep Convolutional Neural Network (CNN) with a built-in set of novel directional filters that highlight the edges of the Cervical Vertebrae in X-ray images. METHODS: A total of 1018 Cephalometric radiographs were labeled and classified according to the Cervical Vertebrae Maturation (CVM) stages. The images were cropped to extract the cervical vertebrae using an Aggregate Channel Features (ACF) object detector. The resulting images were used to train four different Deep Learning (DL) models: our proposed CNN, MobileNetV2, ResNet101, and Xception, together with a set of tunable directional edge enhancers. When using MobileNetV2, ResNet101 and Xception, data augmentation is adopted to allow adequate network complexity while avoiding overfitting. The performance of our CNN model was compared with that of MobileNetV2, ResNet101 and Xception with and without the use of directional filters. For validation and performance assessment, k-fold cross-validation, ROC curves, and p-values were used. RESULTS: The proposed innovative model that uses a CNN preceded with a layer of tunable directional filters achieved a validation accuracy of 84.63%84.63% in CVM stage classification into five classes, exceeding the accuracy achieved with the other DL models investigated. MobileNetV2, ResNet101 and Xception used with directional filters attained accuracies of 78.54%, 74.10%, and 80.86%, respectively. The custom-designed CNN method also achieves 75.11% in six-class CVM stage classification. The effectiveness of the directional filters is reflected in the improved performance attained in the results. If the custom-designed CNN is used without the directional filters, the test accuracy decreases to 80.75%. In the Xception model without the directional filters, the testing accuracy drops slightly to 79.42% in the five-class CVM stage classification. CONCLUSION: The proposed model of a custom-designed CNN together with the tunable Directional Filters (CNNDF) is observed to provide higher accuracy than the commonly used pre-trained network models that we investigated in the fully automated determination of the CVM stages.
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spelling pubmed-92491962022-07-02 Fully automated determination of the cervical vertebrae maturation stages using deep learning with directional filters Atici, Salih Furkan Ansari, Rashid Allareddy, Veerasathpurush Suhaym, Omar Cetin, Ahmet Enis Elnagar, Mohammed H. PLoS One Research Article INTRODUCTION: We aim to apply deep learning to achieve fully automated detection and classification of the Cervical Vertebrae Maturation (CVM) stages. We propose an innovative custom-designed deep Convolutional Neural Network (CNN) with a built-in set of novel directional filters that highlight the edges of the Cervical Vertebrae in X-ray images. METHODS: A total of 1018 Cephalometric radiographs were labeled and classified according to the Cervical Vertebrae Maturation (CVM) stages. The images were cropped to extract the cervical vertebrae using an Aggregate Channel Features (ACF) object detector. The resulting images were used to train four different Deep Learning (DL) models: our proposed CNN, MobileNetV2, ResNet101, and Xception, together with a set of tunable directional edge enhancers. When using MobileNetV2, ResNet101 and Xception, data augmentation is adopted to allow adequate network complexity while avoiding overfitting. The performance of our CNN model was compared with that of MobileNetV2, ResNet101 and Xception with and without the use of directional filters. For validation and performance assessment, k-fold cross-validation, ROC curves, and p-values were used. RESULTS: The proposed innovative model that uses a CNN preceded with a layer of tunable directional filters achieved a validation accuracy of 84.63%84.63% in CVM stage classification into five classes, exceeding the accuracy achieved with the other DL models investigated. MobileNetV2, ResNet101 and Xception used with directional filters attained accuracies of 78.54%, 74.10%, and 80.86%, respectively. The custom-designed CNN method also achieves 75.11% in six-class CVM stage classification. The effectiveness of the directional filters is reflected in the improved performance attained in the results. If the custom-designed CNN is used without the directional filters, the test accuracy decreases to 80.75%. In the Xception model without the directional filters, the testing accuracy drops slightly to 79.42% in the five-class CVM stage classification. CONCLUSION: The proposed model of a custom-designed CNN together with the tunable Directional Filters (CNNDF) is observed to provide higher accuracy than the commonly used pre-trained network models that we investigated in the fully automated determination of the CVM stages. Public Library of Science 2022-07-01 /pmc/articles/PMC9249196/ /pubmed/35776715 http://dx.doi.org/10.1371/journal.pone.0269198 Text en © 2022 Atici et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Atici, Salih Furkan
Ansari, Rashid
Allareddy, Veerasathpurush
Suhaym, Omar
Cetin, Ahmet Enis
Elnagar, Mohammed H.
Fully automated determination of the cervical vertebrae maturation stages using deep learning with directional filters
title Fully automated determination of the cervical vertebrae maturation stages using deep learning with directional filters
title_full Fully automated determination of the cervical vertebrae maturation stages using deep learning with directional filters
title_fullStr Fully automated determination of the cervical vertebrae maturation stages using deep learning with directional filters
title_full_unstemmed Fully automated determination of the cervical vertebrae maturation stages using deep learning with directional filters
title_short Fully automated determination of the cervical vertebrae maturation stages using deep learning with directional filters
title_sort fully automated determination of the cervical vertebrae maturation stages using deep learning with directional filters
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9249196/
https://www.ncbi.nlm.nih.gov/pubmed/35776715
http://dx.doi.org/10.1371/journal.pone.0269198
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