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Molecular Dynamics Investigation of Clustering in Aqueous Glycine Solutions

[Image: see text] Recent experiments with undersaturated aqueous glycine solutions have repeatedly exhibited the presence of giant liquid-like clusters or nanodroplets around 100 nm in diameter. These nanodroplets re-appear even after careful efforts for their removal and purification of the glycine...

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Autores principales: Sweatman, Martin B., Afify, Nasser D., Ferreiro-Rangel, Carlos A., Jorge, Miguel, Sefcik, Jan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9251761/
https://www.ncbi.nlm.nih.gov/pubmed/35729500
http://dx.doi.org/10.1021/acs.jpcb.2c01975
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author Sweatman, Martin B.
Afify, Nasser D.
Ferreiro-Rangel, Carlos A.
Jorge, Miguel
Sefcik, Jan
author_facet Sweatman, Martin B.
Afify, Nasser D.
Ferreiro-Rangel, Carlos A.
Jorge, Miguel
Sefcik, Jan
author_sort Sweatman, Martin B.
collection PubMed
description [Image: see text] Recent experiments with undersaturated aqueous glycine solutions have repeatedly exhibited the presence of giant liquid-like clusters or nanodroplets around 100 nm in diameter. These nanodroplets re-appear even after careful efforts for their removal and purification of the glycine solution. The composition of these clusters is not clear, although it has been suggested that they are mainly composed of glycine, a small and very soluble amino acid. To gain insights into this phenomenon, we study the aggregation of glycine in aqueous solutions at concentrations below the experimental solubility limit using large-scale molecular dynamics simulations under ambient conditions. Three protonation states of glycine (zwitterion = GLZ, anion = GLA, and cation = GLC) are simulated using molecular force fields based on the 1.14*CM1A partial charge scheme, which incorporates the OPLS all-atom force field and TIP3P water. When initiated from dispersed states, we find that giant clusters do not form in our simulations unless salt impurities are present. Moreover, if simulations are initiated from giant cluster states, we find that they tend to dissolve in the absence of salt impurities. Therefore, the simulation results provide little support for the possibility that the giant clusters seen in experiments are composed purely of glycine (and water). Considering that strenuous efforts are made in experiments to remove impurities such as salt, we propose that the giant clusters observed might instead result from the aggregation of reaction products of aqueous glycine, such as diketopiperazine or other oligoglycines which may be difficult to separate from glycine using conventional methods, or their co-aggregation with glycine.
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spelling pubmed-92517612022-07-05 Molecular Dynamics Investigation of Clustering in Aqueous Glycine Solutions Sweatman, Martin B. Afify, Nasser D. Ferreiro-Rangel, Carlos A. Jorge, Miguel Sefcik, Jan J Phys Chem B [Image: see text] Recent experiments with undersaturated aqueous glycine solutions have repeatedly exhibited the presence of giant liquid-like clusters or nanodroplets around 100 nm in diameter. These nanodroplets re-appear even after careful efforts for their removal and purification of the glycine solution. The composition of these clusters is not clear, although it has been suggested that they are mainly composed of glycine, a small and very soluble amino acid. To gain insights into this phenomenon, we study the aggregation of glycine in aqueous solutions at concentrations below the experimental solubility limit using large-scale molecular dynamics simulations under ambient conditions. Three protonation states of glycine (zwitterion = GLZ, anion = GLA, and cation = GLC) are simulated using molecular force fields based on the 1.14*CM1A partial charge scheme, which incorporates the OPLS all-atom force field and TIP3P water. When initiated from dispersed states, we find that giant clusters do not form in our simulations unless salt impurities are present. Moreover, if simulations are initiated from giant cluster states, we find that they tend to dissolve in the absence of salt impurities. Therefore, the simulation results provide little support for the possibility that the giant clusters seen in experiments are composed purely of glycine (and water). Considering that strenuous efforts are made in experiments to remove impurities such as salt, we propose that the giant clusters observed might instead result from the aggregation of reaction products of aqueous glycine, such as diketopiperazine or other oligoglycines which may be difficult to separate from glycine using conventional methods, or their co-aggregation with glycine. American Chemical Society 2022-06-21 2022-06-30 /pmc/articles/PMC9251761/ /pubmed/35729500 http://dx.doi.org/10.1021/acs.jpcb.2c01975 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Sweatman, Martin B.
Afify, Nasser D.
Ferreiro-Rangel, Carlos A.
Jorge, Miguel
Sefcik, Jan
Molecular Dynamics Investigation of Clustering in Aqueous Glycine Solutions
title Molecular Dynamics Investigation of Clustering in Aqueous Glycine Solutions
title_full Molecular Dynamics Investigation of Clustering in Aqueous Glycine Solutions
title_fullStr Molecular Dynamics Investigation of Clustering in Aqueous Glycine Solutions
title_full_unstemmed Molecular Dynamics Investigation of Clustering in Aqueous Glycine Solutions
title_short Molecular Dynamics Investigation of Clustering in Aqueous Glycine Solutions
title_sort molecular dynamics investigation of clustering in aqueous glycine solutions
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9251761/
https://www.ncbi.nlm.nih.gov/pubmed/35729500
http://dx.doi.org/10.1021/acs.jpcb.2c01975
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