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KiMoPack: A python Package for Kinetic Modeling of the Chemical Mechanism

[Image: see text] Herein, we present KiMoPack, an analysis tool for the kinetic modeling of transient spectroscopic data. KiMoPack enables a state-of-the-art analysis routine including data preprocessing and standard fitting (global analysis), as well as fitting of complex (target) kinetic models, i...

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Autores principales: Müller, Carolin, Pascher, Torbjörn, Eriksson, Axl, Chabera, Pavel, Uhlig, Jens
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9251768/
https://www.ncbi.nlm.nih.gov/pubmed/35700393
http://dx.doi.org/10.1021/acs.jpca.2c00907
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author Müller, Carolin
Pascher, Torbjörn
Eriksson, Axl
Chabera, Pavel
Uhlig, Jens
author_facet Müller, Carolin
Pascher, Torbjörn
Eriksson, Axl
Chabera, Pavel
Uhlig, Jens
author_sort Müller, Carolin
collection PubMed
description [Image: see text] Herein, we present KiMoPack, an analysis tool for the kinetic modeling of transient spectroscopic data. KiMoPack enables a state-of-the-art analysis routine including data preprocessing and standard fitting (global analysis), as well as fitting of complex (target) kinetic models, interactive viewing of (fit) results, and multiexperiment analysis via user accessible functions and a graphical user interface (GUI) enhanced interface. To facilitate its use, this paper guides the user through typical operations covering a wide range of analysis tasks, establishes a typical workflow and is bridging the gap between ease of use for less experienced users and introducing the advanced interfaces for experienced users. KiMoPack is open source and provides a comprehensive front-end for preprocessing, fitting and plotting of 2-dimensional data that simplifies the access to a powerful python-based data-processing system and forms the foundation for a well documented, reliable, and reproducible data analysis.
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spelling pubmed-92517682022-07-05 KiMoPack: A python Package for Kinetic Modeling of the Chemical Mechanism Müller, Carolin Pascher, Torbjörn Eriksson, Axl Chabera, Pavel Uhlig, Jens J Phys Chem A [Image: see text] Herein, we present KiMoPack, an analysis tool for the kinetic modeling of transient spectroscopic data. KiMoPack enables a state-of-the-art analysis routine including data preprocessing and standard fitting (global analysis), as well as fitting of complex (target) kinetic models, interactive viewing of (fit) results, and multiexperiment analysis via user accessible functions and a graphical user interface (GUI) enhanced interface. To facilitate its use, this paper guides the user through typical operations covering a wide range of analysis tasks, establishes a typical workflow and is bridging the gap between ease of use for less experienced users and introducing the advanced interfaces for experienced users. KiMoPack is open source and provides a comprehensive front-end for preprocessing, fitting and plotting of 2-dimensional data that simplifies the access to a powerful python-based data-processing system and forms the foundation for a well documented, reliable, and reproducible data analysis. American Chemical Society 2022-06-14 2022-06-30 /pmc/articles/PMC9251768/ /pubmed/35700393 http://dx.doi.org/10.1021/acs.jpca.2c00907 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Müller, Carolin
Pascher, Torbjörn
Eriksson, Axl
Chabera, Pavel
Uhlig, Jens
KiMoPack: A python Package for Kinetic Modeling of the Chemical Mechanism
title KiMoPack: A python Package for Kinetic Modeling of the Chemical Mechanism
title_full KiMoPack: A python Package for Kinetic Modeling of the Chemical Mechanism
title_fullStr KiMoPack: A python Package for Kinetic Modeling of the Chemical Mechanism
title_full_unstemmed KiMoPack: A python Package for Kinetic Modeling of the Chemical Mechanism
title_short KiMoPack: A python Package for Kinetic Modeling of the Chemical Mechanism
title_sort kimopack: a python package for kinetic modeling of the chemical mechanism
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9251768/
https://www.ncbi.nlm.nih.gov/pubmed/35700393
http://dx.doi.org/10.1021/acs.jpca.2c00907
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