Cargando…

Refining bulk segregant analyses: ontology-mediated discovery of flowering time genes in Brassica oleracea

BACKGROUND: Bulk segregant analysis (BSA) can help identify quantitative trait loci (QTLs), but this may result in substantial bycatch of functionally irrelevant genes. RESULTS: Here we develop a Gene Ontology-mediated approach to zoom in on specific genes located inside QTLs identified by BSA as im...

Descripción completa

Detalles Bibliográficos
Autores principales:	Vos, Rutger A., van der Veen-van Wijk, Catharina A. M., Schranz, M. Eric, Vrieling, Klaas, Klinkhamer, Peter G. L., Lens, Frederic
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2022
Materias:	Methodology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9252076/ https://www.ncbi.nlm.nih.gov/pubmed/35780674 http://dx.doi.org/10.1186/s13007-022-00921-y

Ejemplares similares

Analysis of genome-wide variants through bulked segregant RNA sequencing reveals a major gene for resistance to Plasmodiophora brassicae in Brassica oleracea
por: Dakouri, Abdulsalam, et al.
Publicado: (2018)

Phytochemical Background Mediates Effects of Pyrrolizidine Alkaloids on Western Flower Thrips
por: Liu, Xiaojie, et al.
Publicado: (2018)

Functional alleles of the flowering time regulator FRIGIDA in the Brassica oleracea genome
por: Irwin, Judith A, et al.
Publicado: (2012)

Transgressive segregation of primary and secondary metabolites in F(2) hybrids between Jacobaea aquatica and J. vulgaris
por: Kirk, Heather, et al.
Publicado: (2011)

Molecular mapping of QTL alleles of Brassica oleracea affecting days to flowering and photosensitivity in spring Brassica napus
por: Rahman, Habibur, et al.
Publicado: (2018)

The Relationship between Structurally Different Pyrrolizidine Alkaloids and Western Flower Thrips Resistance in F(2) Hybrids of Jacobaea vulgaris and Jacobaea aquatica
por: Cheng, Dandan, et al.
Publicado: (2011)

Trichome Independent Resistance against Western Flower Thrips in Tomato
por: Bac-Molenaar, Johanna A, et al.
Publicado: (2019)

Identification of Metabolic QTLs and Candidate Genes for Glucosinolate Synthesis in Brassica oleracea Leaves, Seeds and Flower Buds
por: Sotelo, Tamara, et al.
Publicado: (2014)

Genome wide analysis of MADS-box gene family in Brassica oleracea reveals conservation and variation in flower development
por: Sheng, Xiao-Guang, et al.
Publicado: (2019)

The broccoli (Brassica oleracea) phloem tissue proteome
por: Anstead, James A, et al.
Publicado: (2013)

A Guide to the Variability of Flavonoids in Brassica oleracea
por: Mageney, Vera, et al.
Publicado: (2017)

Heterodera schachtii Nematodes Interfere with Aphid-Plant Relations on Brassica oleracea
por: Hol, W. H. Gera, et al.
Publicado: (2013)

Heritable variation and small RNAs in the progeny of chimeras of Brassica juncea and Brassica oleracea
por: Li, Junxing, et al.
Publicado: (2013)

The effect of hybridization on secondary metabolites and herbivore resistance: implications for the evolution of chemical diversity in plants
por: Cheng, Dandan, et al.
Publicado: (2010)

Evolutionary changes in growth, regrowth and carbohydrate storage in an invasive plant
por: Lin, Tiantian, et al.
Publicado: (2018)

Interactions between Plant Metabolites Affect Herbivores: A Study with Pyrrolizidine Alkaloids and Chlorogenic Acid
por: Liu, Xiaojie, et al.
Publicado: (2017)

Impact of root-associated strains of three Paraburkholderia species on primary and secondary metabolism of Brassica oleracea
por: Jeon, Je-Seung, et al.
Publicado: (2021)

Identification of Antioxidant Capacity -Related QTLs in Brassica oleracea
por: Sotelo, Tamara, et al.
Publicado: (2014)

Bolbase: a comprehensive genomics database for Brassica oleracea
por: Yu, Jingyin, et al.
Publicado: (2013)

The pangenome of an agronomically important crop plant Brassica oleracea
por: Golicz, Agnieszka A., et al.
Publicado: (2016)

Effect of Temperature Stress on Antioxidant Defenses in Brassica oleracea
por: Soengas, Pilar, et al.
Publicado: (2018)

Species by Environment Interactions Affect Pyrrolizidine Alkaloid Expression in Senecio jacobaea, Senecio aquaticus, and Their Hybrids
por: Kirk, Heather, et al.
Publicado: (2010)

Chromosome Doubling of Microspore-Derived Plants from Cabbage (Brassica oleracea var. capitata L.) and Broccoli (Brassica oleracea var. italica L.)
por: Yuan, Suxia, et al.
Publicado: (2015)

The Impact of Increased CO(2) and Drought Stress on the Secondary Metabolites of Cauliflower (Brassica oleracea var. botrytis) and Cabbage (Brassica oleracea var. capitata)
por: Lupitu, Andreea, et al.
Publicado: (2023)

Transcriptome Analysis Reveals Key Genes and Pathways Associated with the Regulation of Flowering Time in Cabbage (Brassica oleracea L. var. capitata)
por: Wang, Jiao, et al.
Publicado: (2023)

Genome resequencing and comparative variome analysis in a Brassica rapa and Brassica oleracea collection
por: Cheng, Feng, et al.
Publicado: (2016)

Fine mapping of Brassica napus blackleg resistance gene Rlm1 through bulked segregant RNA sequencing
por: Fu, Fuyou, et al.
Publicado: (2019)

The Gene Ontology in 2010: extensions and refinements
Publicado: (2010)

Identification of two quantitative genes controlling soybean flowering using bulked-segregant analysis and genetic mapping
por: Lv, Tianxiao, et al.
Publicado: (2022)

Seasonal and herbivore-induced dynamics of foliar glucosinolates in wild cabbage (Brassica oleracea)
por: Gols, Rieta, et al.
Publicado: (2018)

Red Cabbage (Brassica oleracea) Ameliorates Diabetic Nephropathy in Rats
por: Kataya, Hazem A. H., et al.
Publicado: (2008)

An alginate-layer technique for culture of Brassica oleracea L. protoplasts
por: Kiełkowska, Agnieszka, et al.
Publicado: (2012)

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes
por: Liu, Shengyi, et al.
Publicado: (2014)

In vitro regeneration of eight cultivars of Brassica oleracea var. capitata
por: Gerszberg, Aneta, et al.
Publicado: (2014)

Variation in abundance of predicted resistance genes in the Brassica oleracea pangenome
por: Bayer, Philipp E., et al.
Publicado: (2018)

Identification and Characterization of Three Epithiospecifier Protein Isoforms in Brassica oleracea
por: Witzel, Katja, et al.
Publicado: (2019)

The Evolutionary History of Wild, Domesticated, and Feral Brassica oleracea (Brassicaceae)
por: Mabry, Makenzie E, et al.
Publicado: (2021)

Evaluation of the frequency of Escherichia coli pathogroups in Brassica oleracea cultivars
por: Razeh, Fatemeh, et al.
Publicado: (2022)

BoGDB: An integrative genomic database for Brassica oleracea L.
por: Wang, Yong, et al.
Publicado: (2022)

Effect of cold storage on Carbofuran dissipation in Cabbages (Brassica Oleracea)
por: Shafiee, Maeena Naman, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_ut19qgubdfp52qli7v3flte0m9