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Influence of modelling disorder on Hirshfeld atom refinement results of an organo-gold(I) compound
Details of the validation of disorder modelling with Hirshfeld atom refinement (HAR) for a previously investigated organo-gold(I) compound are presented here. The impact of refining disorder on HAR results is discussed using an analysis of the differences of dynamic structure factors. These dynamic...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9252150/ https://www.ncbi.nlm.nih.gov/pubmed/35844484 http://dx.doi.org/10.1107/S2052252522005309 |
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author | Pawlędzio, Sylwia Malinska, Maura Kleemiss, Florian Grabowsky, Simon Woźniak, Krzysztof |
author_facet | Pawlędzio, Sylwia Malinska, Maura Kleemiss, Florian Grabowsky, Simon Woźniak, Krzysztof |
author_sort | Pawlędzio, Sylwia |
collection | PubMed |
description | Details of the validation of disorder modelling with Hirshfeld atom refinement (HAR) for a previously investigated organo-gold(I) compound are presented here. The impact of refining disorder on HAR results is discussed using an analysis of the differences of dynamic structure factors. These dynamic structure factor differences are calculated from thermally smeared quantum mechanical electron densities based on wavefunctions that include or exclude electron correlation and relativistic effects. When disorder is modelled, the electron densities stem from a weighted superposition of two (or more) different conformers. Here this is shown to impact the relative importance of electron correlation and relativistic effect estimates expressed by the structure factor magnitudes. The role of disorder modelling is also compared with the effect of the treatment of hydrogen anisotropic displacement parameter (ADP) values and atomic anharmonicity of the gold atom. The analysis of ADP values of gold and disordered carbon atoms showed that the effect of disorder significantly altered carbon ADP values and did not influence those of the gold atom. |
format | Online Article Text |
id | pubmed-9252150 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-92521502022-07-14 Influence of modelling disorder on Hirshfeld atom refinement results of an organo-gold(I) compound Pawlędzio, Sylwia Malinska, Maura Kleemiss, Florian Grabowsky, Simon Woźniak, Krzysztof IUCrJ Research Papers Details of the validation of disorder modelling with Hirshfeld atom refinement (HAR) for a previously investigated organo-gold(I) compound are presented here. The impact of refining disorder on HAR results is discussed using an analysis of the differences of dynamic structure factors. These dynamic structure factor differences are calculated from thermally smeared quantum mechanical electron densities based on wavefunctions that include or exclude electron correlation and relativistic effects. When disorder is modelled, the electron densities stem from a weighted superposition of two (or more) different conformers. Here this is shown to impact the relative importance of electron correlation and relativistic effect estimates expressed by the structure factor magnitudes. The role of disorder modelling is also compared with the effect of the treatment of hydrogen anisotropic displacement parameter (ADP) values and atomic anharmonicity of the gold atom. The analysis of ADP values of gold and disordered carbon atoms showed that the effect of disorder significantly altered carbon ADP values and did not influence those of the gold atom. International Union of Crystallography 2022-06-11 /pmc/articles/PMC9252150/ /pubmed/35844484 http://dx.doi.org/10.1107/S2052252522005309 Text en © Sylwia Pawlędzio et al. 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Pawlędzio, Sylwia Malinska, Maura Kleemiss, Florian Grabowsky, Simon Woźniak, Krzysztof Influence of modelling disorder on Hirshfeld atom refinement results of an organo-gold(I) compound |
title | Influence of modelling disorder on Hirshfeld atom refinement results of an organo-gold(I) compound |
title_full | Influence of modelling disorder on Hirshfeld atom refinement results of an organo-gold(I) compound |
title_fullStr | Influence of modelling disorder on Hirshfeld atom refinement results of an organo-gold(I) compound |
title_full_unstemmed | Influence of modelling disorder on Hirshfeld atom refinement results of an organo-gold(I) compound |
title_short | Influence of modelling disorder on Hirshfeld atom refinement results of an organo-gold(I) compound |
title_sort | influence of modelling disorder on hirshfeld atom refinement results of an organo-gold(i) compound |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9252150/ https://www.ncbi.nlm.nih.gov/pubmed/35844484 http://dx.doi.org/10.1107/S2052252522005309 |
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