Cargando…

Reconstruction of full-length LINE-1 progenitors from ancestral genomes

Sequences derived from the Long INterspersed Element-1 (L1) family of retrotransposons occupy at least 17% of the human genome, with 67 distinct subfamilies representing successive waves of expansion and extinction in mammalian lineages. L1s contribute extensively to gene regulation, but their molec...

Descripción completa

Detalles Bibliográficos
Autores principales:	Campitelli, Laura F, Yellan, Isaac, Albu, Mihai, Barazandeh, Marjan, Patel, Zain M, Blanchette, Mathieu, Hughes, Timothy R
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2022
Materias:	Investigation
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9252281/ https://www.ncbi.nlm.nih.gov/pubmed/35552404 http://dx.doi.org/10.1093/genetics/iyac074

Ejemplares similares

Comparison of ChIP-Seq Data and a Reference Motif Set for Human KRAB C2H2 Zinc Finger Proteins
por: Barazandeh, Marjan, et al.
Publicado: (2017)

Ancestral State Reconstruction of the Apoptosis Machinery in the Common Ancestor of Eukaryotes
por: Klim, Joanna, et al.
Publicado: (2018)

A flexible ancestral genome reconstruction method based on gapped adjacencies
por: Gagnon, Yves, et al.
Publicado: (2012)

Algorithms of Ancestral Gene Length Reconstruction
por: Bolshoy, Alexander, et al.
Publicado: (2013)

Prediction of human miRNA target genes using computationally reconstructed ancestral mammalian sequences
por: Leclercq, Mickael, et al.
Publicado: (2017)

Full-length transcriptome analysis of pecan (Carya illinoinensis) kernels
por: Zhang, Chengcai, et al.
Publicado: (2021)

Exploiting ancestral mammalian genomes for the prediction of human transcription factor binding sites
por: Blanchette, Mathieu
Publicado: (2012)

Ancestral Reconstruction
por: Joy, Jeffrey B., et al.
Publicado: (2016)

The Ancestral Caenorhabditis elegans Cuticle Suppresses rol-1
por: Noble, Luke M., et al.
Publicado: (2020)

Full-Length Transcriptome Sequencing and the Discovery of New Transcripts in the Unfertilized Eggs of Zebrafish (Danio rerio)
por: Mehjabin, Rumana, et al.
Publicado: (2019)

Inferring Ancestral Recombination Graphs from Bacterial Genomic Data
por: Vaughan, Timothy G., et al.
Publicado: (2017)

Diverse Eukaryotic CGG-Binding Proteins Produced by Independent Domestications of hAT Transposons
por: Yellan, Isaac, et al.
Publicado: (2021)

A Novel cis Element Achieves the Same Solution as an Ancestral cis Element During Thiamine Starvation in Candida glabrata
por: Iosue, Christine L., et al.
Publicado: (2019)

Inferring the Probability of the Derived vs. the Ancestral Allelic State at a Polymorphic Site
por: Keightley, Peter D., et al.
Publicado: (2018)

Full-Length Transcriptome Profiling of Coridius chinensis Mitochondrial Genome Reveals the Transcription of Genes with Ancestral Arrangement in Insects
por: Xu, Shiwen, et al.
Publicado: (2023)

Parallel Genome-Wide Fixation of Ancestral Alleles in Partially Outcrossing Experimental Populations of Caenorhabditis elegans
por: Chandler, Christopher H.
Publicado: (2014)

Large Scale Full-Length cDNA Sequencing Reveals a Unique Genomic Landscape in a Lepidopteran Model Insect, Bombyx mori
por: Suetsugu, Yoshitaka, et al.
Publicado: (2013)

Ankfn1-mutant vestibular defects require loss of both ancestral and derived paralogs for penetrance in zebrafish
por: Ross, Kevin D, et al.
Publicado: (2021)

Population Dynamics and Evolutionary History of the Weedy Vine Ipomoea hederacea in North America
por: Campitelli,, Brandon E., et al.
Publicado: (2014)

REGEN: Ancestral Genome Reconstruction for Bacteria
por: Yang, Kuan, et al.
Publicado: (2012)

Resolution effects in reconstructing ancestral genomes
por: Zheng, Chunfang, et al.
Publicado: (2018)

Ancestral reconstruction of protein interaction networks
por: Liebeskind, Benjamin J., et al.
Publicado: (2019)

An ancestral host defence peptide within human β-defensin 3 recapitulates the antibacterial and antiviral activity of the full-length molecule
por: Nigro, Ersilia, et al.
Publicado: (2015)

Ancestral Genomes: a resource for reconstructed ancestral genes and genomes across the tree of life
por: Huang, Xiaosong, et al.
Publicado: (2019)

DNA bending in the synaptic complex in V(D)J recombination: turning an ancestral transpososome upside down
por: Ciubotaru, Mihai, et al.
Publicado: (2014)

Reconstruction of the ancestral marsupial karyotype from comparative gene maps
por: Deakin, Janine E, et al.
Publicado: (2013)

Assessing the Accuracy of Ancestral Protein Reconstruction Methods
por: Williams, Paul D, et al.
Publicado: (2006)

Reconstruction of ancestral protein sequences and its applications
por: Cai, Wei, et al.
Publicado: (2004)

Robustness of Ancestral Sequence Reconstruction to Phylogenetic Uncertainty
por: Hanson-Smith, Victor, et al.
Publicado: (2010)

An experimental phylogeny to benchmark ancestral sequence reconstruction
por: Randall, Ryan N., et al.
Publicado: (2016)

Ancestral Genome Reconstruction on Whole Genome Level
por: Feng, Bing, et al.
Publicado: (2017)

Alignment Modulates Ancestral Sequence Reconstruction Accuracy
por: Vialle, Ricardo Assunção, et al.
Publicado: (2018)

Stratified reconstruction of ancestral Escherichia coli diversification
por: Gonzalez-Alba, José Maria, et al.
Publicado: (2019)

A Dense Linkage Map for Chinook salmon (Oncorhynchus tshawytscha) Reveals Variable Chromosomal Divergence After an Ancestral Whole Genome Duplication Event
por: Brieuc, Marine S. O., et al.
Publicado: (2013)

Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations
por: Giallonardo, Francesca Di, et al.
Publicado: (2014)

Reconstruction of full-length circular RNAs enables isoform-level quantification
por: Zheng, Yi, et al.
Publicado: (2019)

Reconstruction of full-length ureter defects by laparoscopic bladder flap forming
por: Bai, Yuchen, et al.
Publicado: (2021)

The Drosophila Genome Nexus: A Population Genomic Resource of 623 Drosophila melanogaster Genomes, Including 197 from a Single Ancestral Range Population
por: Lack, Justin B., et al.
Publicado: (2015)

Germline progenitors and oocyte production in the honeybee queen ovary
por: Cullen, Georgia, et al.
Publicado: (2023)

Optimized ancestral state reconstruction using Sankoff parsimony
por: Clemente, José C, et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_qh2610ughm81jjuvo3267cu7dg