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The Quest for Orthologs orthology benchmark service in 2022
The Orthology Benchmark Service (https://orthology.benchmarkservice.org) is the gold standard for orthology inference evaluation, supported and maintained by the Quest for Orthologs consortium. It is an essential resource to compare existing and new methods of orthology inference (the bedrock for ma...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9252809/ https://www.ncbi.nlm.nih.gov/pubmed/35552456 http://dx.doi.org/10.1093/nar/gkac330 |
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author | Nevers, Yannis Jones, Tamsin E M Jyothi, Dushyanth Yates, Bethan Ferret, Meritxell Portell-Silva, Laura Codo, Laia Cosentino, Salvatore Marcet-Houben, Marina Vlasova, Anna Poidevin, Laetitia Kress, Arnaud Hickman, Mark Persson, Emma Piližota, Ivana Guijarro-Clarke, Cristina Iwasaki, Wataru Lecompte, Odile Sonnhammer, Erik Roos, David S Gabaldón, Toni Thybert, David Thomas, Paul D Hu, Yanhui Emms, David M Bruford, Elspeth Capella-Gutierrez, Salvador Martin, Maria J Dessimoz, Christophe Altenhoff, Adrian |
author_facet | Nevers, Yannis Jones, Tamsin E M Jyothi, Dushyanth Yates, Bethan Ferret, Meritxell Portell-Silva, Laura Codo, Laia Cosentino, Salvatore Marcet-Houben, Marina Vlasova, Anna Poidevin, Laetitia Kress, Arnaud Hickman, Mark Persson, Emma Piližota, Ivana Guijarro-Clarke, Cristina Iwasaki, Wataru Lecompte, Odile Sonnhammer, Erik Roos, David S Gabaldón, Toni Thybert, David Thomas, Paul D Hu, Yanhui Emms, David M Bruford, Elspeth Capella-Gutierrez, Salvador Martin, Maria J Dessimoz, Christophe Altenhoff, Adrian |
author_sort | Nevers, Yannis |
collection | PubMed |
description | The Orthology Benchmark Service (https://orthology.benchmarkservice.org) is the gold standard for orthology inference evaluation, supported and maintained by the Quest for Orthologs consortium. It is an essential resource to compare existing and new methods of orthology inference (the bedrock for many comparative genomics and phylogenetic analysis) over a standard dataset and through common procedures. The Quest for Orthologs Consortium is dedicated to maintaining the resource up to date, through regular updates of the Reference Proteomes and increasingly accessible data through the OpenEBench platform. For this update, we have added a new benchmark based on curated orthology assertion from the Vertebrate Gene Nomenclature Committee, and provided an example meta-analysis of the public predictions present on the platform. |
format | Online Article Text |
id | pubmed-9252809 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-92528092022-07-05 The Quest for Orthologs orthology benchmark service in 2022 Nevers, Yannis Jones, Tamsin E M Jyothi, Dushyanth Yates, Bethan Ferret, Meritxell Portell-Silva, Laura Codo, Laia Cosentino, Salvatore Marcet-Houben, Marina Vlasova, Anna Poidevin, Laetitia Kress, Arnaud Hickman, Mark Persson, Emma Piližota, Ivana Guijarro-Clarke, Cristina Iwasaki, Wataru Lecompte, Odile Sonnhammer, Erik Roos, David S Gabaldón, Toni Thybert, David Thomas, Paul D Hu, Yanhui Emms, David M Bruford, Elspeth Capella-Gutierrez, Salvador Martin, Maria J Dessimoz, Christophe Altenhoff, Adrian Nucleic Acids Res Web Server Issue The Orthology Benchmark Service (https://orthology.benchmarkservice.org) is the gold standard for orthology inference evaluation, supported and maintained by the Quest for Orthologs consortium. It is an essential resource to compare existing and new methods of orthology inference (the bedrock for many comparative genomics and phylogenetic analysis) over a standard dataset and through common procedures. The Quest for Orthologs Consortium is dedicated to maintaining the resource up to date, through regular updates of the Reference Proteomes and increasingly accessible data through the OpenEBench platform. For this update, we have added a new benchmark based on curated orthology assertion from the Vertebrate Gene Nomenclature Committee, and provided an example meta-analysis of the public predictions present on the platform. Oxford University Press 2022-05-12 /pmc/articles/PMC9252809/ /pubmed/35552456 http://dx.doi.org/10.1093/nar/gkac330 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Web Server Issue Nevers, Yannis Jones, Tamsin E M Jyothi, Dushyanth Yates, Bethan Ferret, Meritxell Portell-Silva, Laura Codo, Laia Cosentino, Salvatore Marcet-Houben, Marina Vlasova, Anna Poidevin, Laetitia Kress, Arnaud Hickman, Mark Persson, Emma Piližota, Ivana Guijarro-Clarke, Cristina Iwasaki, Wataru Lecompte, Odile Sonnhammer, Erik Roos, David S Gabaldón, Toni Thybert, David Thomas, Paul D Hu, Yanhui Emms, David M Bruford, Elspeth Capella-Gutierrez, Salvador Martin, Maria J Dessimoz, Christophe Altenhoff, Adrian The Quest for Orthologs orthology benchmark service in 2022 |
title | The Quest for Orthologs orthology benchmark service in 2022 |
title_full | The Quest for Orthologs orthology benchmark service in 2022 |
title_fullStr | The Quest for Orthologs orthology benchmark service in 2022 |
title_full_unstemmed | The Quest for Orthologs orthology benchmark service in 2022 |
title_short | The Quest for Orthologs orthology benchmark service in 2022 |
title_sort | quest for orthologs orthology benchmark service in 2022 |
topic | Web Server Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9252809/ https://www.ncbi.nlm.nih.gov/pubmed/35552456 http://dx.doi.org/10.1093/nar/gkac330 |
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