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IBS 2.0: an upgraded illustrator for the visualization of biological sequences
The visualization of biological sequences with various functional elements is fundamental for the publication of scientific achievements in the field of molecular and cellular biology. However, due to the limitations of the currently used applications, there are still considerable challenges in the...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9252815/ https://www.ncbi.nlm.nih.gov/pubmed/35580044 http://dx.doi.org/10.1093/nar/gkac373 |
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author | Xie, Yubin Li, Huiqin Luo, Xiaotong Li, Hongyu Gao, Qiuyuan Zhang, Luowanyue Teng, Yuyan Zhao, Qi Zuo, Zhixiang Ren, Jian |
author_facet | Xie, Yubin Li, Huiqin Luo, Xiaotong Li, Hongyu Gao, Qiuyuan Zhang, Luowanyue Teng, Yuyan Zhao, Qi Zuo, Zhixiang Ren, Jian |
author_sort | Xie, Yubin |
collection | PubMed |
description | The visualization of biological sequences with various functional elements is fundamental for the publication of scientific achievements in the field of molecular and cellular biology. However, due to the limitations of the currently used applications, there are still considerable challenges in the preparation of biological schematic diagrams. Here, we present a professional tool called IBS 2.0 for illustrating the organization of both protein and nucleotide sequences. With the abundant graphical elements provided in IBS 2.0, biological sequences can be easily represented in a concise and clear way. Moreover, we implemented a database visualization module in IBS 2.0, enabling batch visualization of biological sequences from the UniProt and the NCBI RefSeq databases. Furthermore, to increase the design efficiency, a resource platform that allows uploading, retrieval, and browsing of existing biological sequence diagrams has been integrated into IBS 2.0. In addition, a lightweight JS library was developed in IBS 2.0 to assist the visualization of biological sequences in customized web services. To obtain the latest version of IBS 2.0, please visit https://ibs.renlab.org. |
format | Online Article Text |
id | pubmed-9252815 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-92528152022-07-05 IBS 2.0: an upgraded illustrator for the visualization of biological sequences Xie, Yubin Li, Huiqin Luo, Xiaotong Li, Hongyu Gao, Qiuyuan Zhang, Luowanyue Teng, Yuyan Zhao, Qi Zuo, Zhixiang Ren, Jian Nucleic Acids Res Web Server Issue The visualization of biological sequences with various functional elements is fundamental for the publication of scientific achievements in the field of molecular and cellular biology. However, due to the limitations of the currently used applications, there are still considerable challenges in the preparation of biological schematic diagrams. Here, we present a professional tool called IBS 2.0 for illustrating the organization of both protein and nucleotide sequences. With the abundant graphical elements provided in IBS 2.0, biological sequences can be easily represented in a concise and clear way. Moreover, we implemented a database visualization module in IBS 2.0, enabling batch visualization of biological sequences from the UniProt and the NCBI RefSeq databases. Furthermore, to increase the design efficiency, a resource platform that allows uploading, retrieval, and browsing of existing biological sequence diagrams has been integrated into IBS 2.0. In addition, a lightweight JS library was developed in IBS 2.0 to assist the visualization of biological sequences in customized web services. To obtain the latest version of IBS 2.0, please visit https://ibs.renlab.org. Oxford University Press 2022-05-17 /pmc/articles/PMC9252815/ /pubmed/35580044 http://dx.doi.org/10.1093/nar/gkac373 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Web Server Issue Xie, Yubin Li, Huiqin Luo, Xiaotong Li, Hongyu Gao, Qiuyuan Zhang, Luowanyue Teng, Yuyan Zhao, Qi Zuo, Zhixiang Ren, Jian IBS 2.0: an upgraded illustrator for the visualization of biological sequences |
title | IBS 2.0: an upgraded illustrator for the visualization of biological sequences |
title_full | IBS 2.0: an upgraded illustrator for the visualization of biological sequences |
title_fullStr | IBS 2.0: an upgraded illustrator for the visualization of biological sequences |
title_full_unstemmed | IBS 2.0: an upgraded illustrator for the visualization of biological sequences |
title_short | IBS 2.0: an upgraded illustrator for the visualization of biological sequences |
title_sort | ibs 2.0: an upgraded illustrator for the visualization of biological sequences |
topic | Web Server Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9252815/ https://www.ncbi.nlm.nih.gov/pubmed/35580044 http://dx.doi.org/10.1093/nar/gkac373 |
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