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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
Galaxy is a mature, browser accessible workbench for scientific computing. It enables scientists to share, analyze and visualize their own data, with minimal technical impediments. A thriving global community continues to use, maintain and contribute to the project, with support from multiple nation...
Formato: | Online Artículo Texto |
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Lenguaje: | English |
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Oxford University Press
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9252830/ https://www.ncbi.nlm.nih.gov/pubmed/35446428 http://dx.doi.org/10.1093/nar/gkac247 |
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collection | PubMed |
description | Galaxy is a mature, browser accessible workbench for scientific computing. It enables scientists to share, analyze and visualize their own data, with minimal technical impediments. A thriving global community continues to use, maintain and contribute to the project, with support from multiple national infrastructure providers that enable freely accessible analysis and training services. The Galaxy Training Network supports free, self-directed, virtual training with >230 integrated tutorials. Project engagement metrics have continued to grow over the last 2 years, including source code contributions, publications, software packages wrapped as tools, registered users and their daily analysis jobs, and new independent specialized servers. Key Galaxy technical developments include an improved user interface for launching large-scale analyses with many files, interactive tools for exploratory data analysis, and a complete suite of machine learning tools. Important scientific developments enabled by Galaxy include Vertebrate Genome Project (VGP) assembly workflows and global SARS-CoV-2 collaborations. |
format | Online Article Text |
id | pubmed-9252830 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-92528302022-07-05 The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update Nucleic Acids Res Web Server Issue Galaxy is a mature, browser accessible workbench for scientific computing. It enables scientists to share, analyze and visualize their own data, with minimal technical impediments. A thriving global community continues to use, maintain and contribute to the project, with support from multiple national infrastructure providers that enable freely accessible analysis and training services. The Galaxy Training Network supports free, self-directed, virtual training with >230 integrated tutorials. Project engagement metrics have continued to grow over the last 2 years, including source code contributions, publications, software packages wrapped as tools, registered users and their daily analysis jobs, and new independent specialized servers. Key Galaxy technical developments include an improved user interface for launching large-scale analyses with many files, interactive tools for exploratory data analysis, and a complete suite of machine learning tools. Important scientific developments enabled by Galaxy include Vertebrate Genome Project (VGP) assembly workflows and global SARS-CoV-2 collaborations. Oxford University Press 2022-04-21 /pmc/articles/PMC9252830/ /pubmed/35446428 http://dx.doi.org/10.1093/nar/gkac247 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Web Server Issue The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update |
title | The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update |
title_full | The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update |
title_fullStr | The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update |
title_full_unstemmed | The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update |
title_short | The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update |
title_sort | galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update |
topic | Web Server Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9252830/ https://www.ncbi.nlm.nih.gov/pubmed/35446428 http://dx.doi.org/10.1093/nar/gkac247 |
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