Cargando…

An ML prediction model based on clinical parameters and automated CT scan features for COVID-19 patients

Outcome prediction for individual patient groups is of paramount importance in terms of selection of appropriate therapeutic options, risk communication to patients and families, and allocating resource through optimum triage. This has become even more necessary in the context of the current COVID-1...

Descripción completa

Detalles Bibliográficos
Autores principales: Sinha, Abhishar, Joshi, Swati Purohit, Das, Purnendu Sekhar, Jana, Soumya, Sarkar, Rahuldeb
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9252998/
https://www.ncbi.nlm.nih.gov/pubmed/35788637
http://dx.doi.org/10.1038/s41598-022-15327-y
_version_ 1784740399778103296
author Sinha, Abhishar
Joshi, Swati Purohit
Das, Purnendu Sekhar
Jana, Soumya
Sarkar, Rahuldeb
author_facet Sinha, Abhishar
Joshi, Swati Purohit
Das, Purnendu Sekhar
Jana, Soumya
Sarkar, Rahuldeb
author_sort Sinha, Abhishar
collection PubMed
description Outcome prediction for individual patient groups is of paramount importance in terms of selection of appropriate therapeutic options, risk communication to patients and families, and allocating resource through optimum triage. This has become even more necessary in the context of the current COVID-19 pandemic. Widening the spectrum of predictor variables by including radiological parameters alongside the usually utilized demographic, clinical and biochemical ones can facilitate building a comprehensive prediction model. Automation has the potential to build such models with applications to time-critical environments so that a clinician will be able to utilize the model outcomes in real-time decision making at bedside. We show that amalgamation of computed tomogram (CT) data with clinical parameters (CP) in generating a Machine Learning model from 302 COVID-19 patients presenting to an acute care hospital in India could prognosticate the need for invasive mechanical ventilation. Models developed from CP alone, CP and radiologist derived CT severity score and CP with automated lesion-to-lung ratio had AUC of 0.87 (95% CI 0.85–0.88), 0.89 (95% CI 0.87–0.91), and 0.91 (95% CI 0.89–0.93), respectively. We show that an operating point on the ROC can be chosen to aid clinicians in risk characterization according to the resource availability and ethical considerations. This approach can be deployed in more general settings, with appropriate calibrations, to predict outcomes of severe COVID-19 patients effectively.
format Online
Article
Text
id pubmed-9252998
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-92529982022-07-06 An ML prediction model based on clinical parameters and automated CT scan features for COVID-19 patients Sinha, Abhishar Joshi, Swati Purohit Das, Purnendu Sekhar Jana, Soumya Sarkar, Rahuldeb Sci Rep Article Outcome prediction for individual patient groups is of paramount importance in terms of selection of appropriate therapeutic options, risk communication to patients and families, and allocating resource through optimum triage. This has become even more necessary in the context of the current COVID-19 pandemic. Widening the spectrum of predictor variables by including radiological parameters alongside the usually utilized demographic, clinical and biochemical ones can facilitate building a comprehensive prediction model. Automation has the potential to build such models with applications to time-critical environments so that a clinician will be able to utilize the model outcomes in real-time decision making at bedside. We show that amalgamation of computed tomogram (CT) data with clinical parameters (CP) in generating a Machine Learning model from 302 COVID-19 patients presenting to an acute care hospital in India could prognosticate the need for invasive mechanical ventilation. Models developed from CP alone, CP and radiologist derived CT severity score and CP with automated lesion-to-lung ratio had AUC of 0.87 (95% CI 0.85–0.88), 0.89 (95% CI 0.87–0.91), and 0.91 (95% CI 0.89–0.93), respectively. We show that an operating point on the ROC can be chosen to aid clinicians in risk characterization according to the resource availability and ethical considerations. This approach can be deployed in more general settings, with appropriate calibrations, to predict outcomes of severe COVID-19 patients effectively. Nature Publishing Group UK 2022-07-04 /pmc/articles/PMC9252998/ /pubmed/35788637 http://dx.doi.org/10.1038/s41598-022-15327-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Sinha, Abhishar
Joshi, Swati Purohit
Das, Purnendu Sekhar
Jana, Soumya
Sarkar, Rahuldeb
An ML prediction model based on clinical parameters and automated CT scan features for COVID-19 patients
title An ML prediction model based on clinical parameters and automated CT scan features for COVID-19 patients
title_full An ML prediction model based on clinical parameters and automated CT scan features for COVID-19 patients
title_fullStr An ML prediction model based on clinical parameters and automated CT scan features for COVID-19 patients
title_full_unstemmed An ML prediction model based on clinical parameters and automated CT scan features for COVID-19 patients
title_short An ML prediction model based on clinical parameters and automated CT scan features for COVID-19 patients
title_sort ml prediction model based on clinical parameters and automated ct scan features for covid-19 patients
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9252998/
https://www.ncbi.nlm.nih.gov/pubmed/35788637
http://dx.doi.org/10.1038/s41598-022-15327-y
work_keys_str_mv AT sinhaabhishar anmlpredictionmodelbasedonclinicalparametersandautomatedctscanfeaturesforcovid19patients
AT joshiswatipurohit anmlpredictionmodelbasedonclinicalparametersandautomatedctscanfeaturesforcovid19patients
AT daspurnendusekhar anmlpredictionmodelbasedonclinicalparametersandautomatedctscanfeaturesforcovid19patients
AT janasoumya anmlpredictionmodelbasedonclinicalparametersandautomatedctscanfeaturesforcovid19patients
AT sarkarrahuldeb anmlpredictionmodelbasedonclinicalparametersandautomatedctscanfeaturesforcovid19patients
AT sinhaabhishar mlpredictionmodelbasedonclinicalparametersandautomatedctscanfeaturesforcovid19patients
AT joshiswatipurohit mlpredictionmodelbasedonclinicalparametersandautomatedctscanfeaturesforcovid19patients
AT daspurnendusekhar mlpredictionmodelbasedonclinicalparametersandautomatedctscanfeaturesforcovid19patients
AT janasoumya mlpredictionmodelbasedonclinicalparametersandautomatedctscanfeaturesforcovid19patients
AT sarkarrahuldeb mlpredictionmodelbasedonclinicalparametersandautomatedctscanfeaturesforcovid19patients