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Candidate Drugs Screening for Behcet’s Disease Based on Bioinformatics Analysis and Mouse Experiments

BACKGROUND: Behcet’s disease (BD) is a chronic immune disease that involves multiple systems. As the pathogenesis of BD is not clear, and new treatments are needed, we used bioinformatics to identify potential drugs and validated them in mouse models. METHODS: Behcet’s disease-related target genes a...

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Autores principales: Xia, Qinyun, Lyu, Chujun, Li, Fang, Pang, Binbin, Guo, Xiaoyu, Ren, He, Xing, Yiqiao, Chen, Zhen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9253297/
https://www.ncbi.nlm.nih.gov/pubmed/35799784
http://dx.doi.org/10.3389/fimmu.2022.895869
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author Xia, Qinyun
Lyu, Chujun
Li, Fang
Pang, Binbin
Guo, Xiaoyu
Ren, He
Xing, Yiqiao
Chen, Zhen
author_facet Xia, Qinyun
Lyu, Chujun
Li, Fang
Pang, Binbin
Guo, Xiaoyu
Ren, He
Xing, Yiqiao
Chen, Zhen
author_sort Xia, Qinyun
collection PubMed
description BACKGROUND: Behcet’s disease (BD) is a chronic immune disease that involves multiple systems. As the pathogenesis of BD is not clear, and new treatments are needed, we used bioinformatics to identify potential drugs and validated them in mouse models. METHODS: Behcet’s disease-related target genes and proteins were screened in the PubMed and UVEOGENE databases. The biological functions and pathways of the target genes were analyzed in detail by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses. A protein-protein interaction (PPI) network was constructed by the STRING database, and hub genes were identified by the Cytoscape plug-in CytoHubba. Gene-drug interactions were identified from the DGIdb database. Experimental autoimmune uveitis (EAU) mice were used as an animal model for drug validation. RESULTS: A total of 249 target genes and proteins with significant differences in BD were screened, and the results of functional enrichment analysis suggested that these genes and proteins were more located on the cell membrane, involved in regulating the production of cytokines and affecting the activity of cytokines. They mainly regulated “Cytokine- Cytokine receptor interaction”, “Inflammatory bowel disease (IBD)” and “IL-17 signaling Pathway”. In addition, 10 hub genes were obtained through PPI network construction and CytoHubba analysis, among which the top 3 hub genes were closely related to BD. The DGIdb analysis enriched seven drugs acting together on the top 3 hub genes, four of which were confirmed for the treatment of BD or its complications. There is no evidence in the research to support the results in omeprazole, rabeprazole, and celastrol. However, animal experiments showed that rabeprazole and celastrol reduced anterior chamber inflammation and retinal inflammation in EAU mice. CONCLUSIONS: The functional analysis of genes and proteins related to BD, identification of hub genes, and validation of potential drugs provide new insights into the disease mechanism and potential for the treatment of BD.
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spelling pubmed-92532972022-07-06 Candidate Drugs Screening for Behcet’s Disease Based on Bioinformatics Analysis and Mouse Experiments Xia, Qinyun Lyu, Chujun Li, Fang Pang, Binbin Guo, Xiaoyu Ren, He Xing, Yiqiao Chen, Zhen Front Immunol Immunology BACKGROUND: Behcet’s disease (BD) is a chronic immune disease that involves multiple systems. As the pathogenesis of BD is not clear, and new treatments are needed, we used bioinformatics to identify potential drugs and validated them in mouse models. METHODS: Behcet’s disease-related target genes and proteins were screened in the PubMed and UVEOGENE databases. The biological functions and pathways of the target genes were analyzed in detail by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses. A protein-protein interaction (PPI) network was constructed by the STRING database, and hub genes were identified by the Cytoscape plug-in CytoHubba. Gene-drug interactions were identified from the DGIdb database. Experimental autoimmune uveitis (EAU) mice were used as an animal model for drug validation. RESULTS: A total of 249 target genes and proteins with significant differences in BD were screened, and the results of functional enrichment analysis suggested that these genes and proteins were more located on the cell membrane, involved in regulating the production of cytokines and affecting the activity of cytokines. They mainly regulated “Cytokine- Cytokine receptor interaction”, “Inflammatory bowel disease (IBD)” and “IL-17 signaling Pathway”. In addition, 10 hub genes were obtained through PPI network construction and CytoHubba analysis, among which the top 3 hub genes were closely related to BD. The DGIdb analysis enriched seven drugs acting together on the top 3 hub genes, four of which were confirmed for the treatment of BD or its complications. There is no evidence in the research to support the results in omeprazole, rabeprazole, and celastrol. However, animal experiments showed that rabeprazole and celastrol reduced anterior chamber inflammation and retinal inflammation in EAU mice. CONCLUSIONS: The functional analysis of genes and proteins related to BD, identification of hub genes, and validation of potential drugs provide new insights into the disease mechanism and potential for the treatment of BD. Frontiers Media S.A. 2022-06-21 /pmc/articles/PMC9253297/ /pubmed/35799784 http://dx.doi.org/10.3389/fimmu.2022.895869 Text en Copyright © 2022 Xia, Lyu, Li, Pang, Guo, Ren, Xing and Chen https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Xia, Qinyun
Lyu, Chujun
Li, Fang
Pang, Binbin
Guo, Xiaoyu
Ren, He
Xing, Yiqiao
Chen, Zhen
Candidate Drugs Screening for Behcet’s Disease Based on Bioinformatics Analysis and Mouse Experiments
title Candidate Drugs Screening for Behcet’s Disease Based on Bioinformatics Analysis and Mouse Experiments
title_full Candidate Drugs Screening for Behcet’s Disease Based on Bioinformatics Analysis and Mouse Experiments
title_fullStr Candidate Drugs Screening for Behcet’s Disease Based on Bioinformatics Analysis and Mouse Experiments
title_full_unstemmed Candidate Drugs Screening for Behcet’s Disease Based on Bioinformatics Analysis and Mouse Experiments
title_short Candidate Drugs Screening for Behcet’s Disease Based on Bioinformatics Analysis and Mouse Experiments
title_sort candidate drugs screening for behcet’s disease based on bioinformatics analysis and mouse experiments
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9253297/
https://www.ncbi.nlm.nih.gov/pubmed/35799784
http://dx.doi.org/10.3389/fimmu.2022.895869
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