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Genome sequencing data of extended-spectrum beta-lactamase-producing Escherichia coli INF191/17/A isolates of nosocomial infection

The infection with extended-spectrum beta-lactamase-producing Escherichia coli is associated with higher mortality, longer length of hospital-stay and increased costs compared to infection with antibiotic-susceptible E. coli. Here, the draft genome of ESBL-producing E. coli circulating at local hosp...

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Autores principales: Ahmad, Nik Siti Hanifah Nik, Yin, Khor Bee, Yusof, Nik Yusnoraini
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9253457/
https://www.ncbi.nlm.nih.gov/pubmed/35799858
http://dx.doi.org/10.1016/j.dib.2022.108407
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author Ahmad, Nik Siti Hanifah Nik
Yin, Khor Bee
Yusof, Nik Yusnoraini
author_facet Ahmad, Nik Siti Hanifah Nik
Yin, Khor Bee
Yusof, Nik Yusnoraini
author_sort Ahmad, Nik Siti Hanifah Nik
collection PubMed
description The infection with extended-spectrum beta-lactamase-producing Escherichia coli is associated with higher mortality, longer length of hospital-stay and increased costs compared to infection with antibiotic-susceptible E. coli. Here, the draft genome of ESBL-producing E. coli circulating at local hospital is reported. The strain was detected as containing the genes of antibiotic resistance TEM, CTX-M-1, and CTX-M-9. The 5,136,548-bp genome, with a GC content of 50.59%, comprised 4987 protein-coding genes, four ribosomal RNA, and 66 transfer RNA. The ResFinder was successfully predicted fourteen antimicrobial genes in the E. coli INF191/17/A genome. Sequence data has been deposited in the GenBank database under the accession number JAIEXV000000000. The BioProject ID in the GenBank database is PRJNA752944. The raw data was sequenced using Ilumina MiSeq and submitted to the NCBI SRA database (SRX11797310), which is publicly available.
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spelling pubmed-92534572022-07-06 Genome sequencing data of extended-spectrum beta-lactamase-producing Escherichia coli INF191/17/A isolates of nosocomial infection Ahmad, Nik Siti Hanifah Nik Yin, Khor Bee Yusof, Nik Yusnoraini Data Brief Data Article The infection with extended-spectrum beta-lactamase-producing Escherichia coli is associated with higher mortality, longer length of hospital-stay and increased costs compared to infection with antibiotic-susceptible E. coli. Here, the draft genome of ESBL-producing E. coli circulating at local hospital is reported. The strain was detected as containing the genes of antibiotic resistance TEM, CTX-M-1, and CTX-M-9. The 5,136,548-bp genome, with a GC content of 50.59%, comprised 4987 protein-coding genes, four ribosomal RNA, and 66 transfer RNA. The ResFinder was successfully predicted fourteen antimicrobial genes in the E. coli INF191/17/A genome. Sequence data has been deposited in the GenBank database under the accession number JAIEXV000000000. The BioProject ID in the GenBank database is PRJNA752944. The raw data was sequenced using Ilumina MiSeq and submitted to the NCBI SRA database (SRX11797310), which is publicly available. Elsevier 2022-06-23 /pmc/articles/PMC9253457/ /pubmed/35799858 http://dx.doi.org/10.1016/j.dib.2022.108407 Text en © 2022 The Author(s). Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Ahmad, Nik Siti Hanifah Nik
Yin, Khor Bee
Yusof, Nik Yusnoraini
Genome sequencing data of extended-spectrum beta-lactamase-producing Escherichia coli INF191/17/A isolates of nosocomial infection
title Genome sequencing data of extended-spectrum beta-lactamase-producing Escherichia coli INF191/17/A isolates of nosocomial infection
title_full Genome sequencing data of extended-spectrum beta-lactamase-producing Escherichia coli INF191/17/A isolates of nosocomial infection
title_fullStr Genome sequencing data of extended-spectrum beta-lactamase-producing Escherichia coli INF191/17/A isolates of nosocomial infection
title_full_unstemmed Genome sequencing data of extended-spectrum beta-lactamase-producing Escherichia coli INF191/17/A isolates of nosocomial infection
title_short Genome sequencing data of extended-spectrum beta-lactamase-producing Escherichia coli INF191/17/A isolates of nosocomial infection
title_sort genome sequencing data of extended-spectrum beta-lactamase-producing escherichia coli inf191/17/a isolates of nosocomial infection
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9253457/
https://www.ncbi.nlm.nih.gov/pubmed/35799858
http://dx.doi.org/10.1016/j.dib.2022.108407
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