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The Transposition Rate Has Little Influence on the Plateauing Level of the P-element
The popular trap model assumes that the invasions of transposable elements (TEs) in mammals and invertebrates are stopped by piRNAs that emerge after insertion of the TE into a piRNA cluster. It remains, however, still unclear which factors influence the dynamics of TE invasions. The activity of the...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9254008/ https://www.ncbi.nlm.nih.gov/pubmed/35731857 http://dx.doi.org/10.1093/molbev/msac141 |
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author | Kofler, Robert Nolte, Viola Schlötterer, Christian |
author_facet | Kofler, Robert Nolte, Viola Schlötterer, Christian |
author_sort | Kofler, Robert |
collection | PubMed |
description | The popular trap model assumes that the invasions of transposable elements (TEs) in mammals and invertebrates are stopped by piRNAs that emerge after insertion of the TE into a piRNA cluster. It remains, however, still unclear which factors influence the dynamics of TE invasions. The activity of the TE (i.e., transposition rate) is one frequently discussed key factor. Here we take advantage of the temperature-dependent activity of the P-element, a widely studied eukaryotic TE, to test how TE activity affects the dynamics of a TE invasion. We monitored P-element invasion dynamics in experimental Drosophila simulans populations at hot and cold culture conditions. Despite marked differences in transposition rates, the P-element reached very similar copy numbers at both temperatures. The reduction of the insertion rate upon approaching the copy number plateau was accompanied by similar amounts of piRNAs against the P-element at both temperatures. Nevertheless, we also observed fewer P-element insertions in piRNA clusters than expected, which is not compatible with a simple trap model. The ping-pong cycle, which degrades TE transcripts, becomes typically active after the copy number plateaued. We generated a model, with few parameters, that largely captures the observed invasion dynamics. We conclude that the transposition rate has at the most only a minor influence on TE abundance, but other factors, such as paramutations or selection against TE insertions are shaping the TE composition. |
format | Online Article Text |
id | pubmed-9254008 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-92540082022-07-05 The Transposition Rate Has Little Influence on the Plateauing Level of the P-element Kofler, Robert Nolte, Viola Schlötterer, Christian Mol Biol Evol Discoveries The popular trap model assumes that the invasions of transposable elements (TEs) in mammals and invertebrates are stopped by piRNAs that emerge after insertion of the TE into a piRNA cluster. It remains, however, still unclear which factors influence the dynamics of TE invasions. The activity of the TE (i.e., transposition rate) is one frequently discussed key factor. Here we take advantage of the temperature-dependent activity of the P-element, a widely studied eukaryotic TE, to test how TE activity affects the dynamics of a TE invasion. We monitored P-element invasion dynamics in experimental Drosophila simulans populations at hot and cold culture conditions. Despite marked differences in transposition rates, the P-element reached very similar copy numbers at both temperatures. The reduction of the insertion rate upon approaching the copy number plateau was accompanied by similar amounts of piRNAs against the P-element at both temperatures. Nevertheless, we also observed fewer P-element insertions in piRNA clusters than expected, which is not compatible with a simple trap model. The ping-pong cycle, which degrades TE transcripts, becomes typically active after the copy number plateaued. We generated a model, with few parameters, that largely captures the observed invasion dynamics. We conclude that the transposition rate has at the most only a minor influence on TE abundance, but other factors, such as paramutations or selection against TE insertions are shaping the TE composition. Oxford University Press 2022-06-22 /pmc/articles/PMC9254008/ /pubmed/35731857 http://dx.doi.org/10.1093/molbev/msac141 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Discoveries Kofler, Robert Nolte, Viola Schlötterer, Christian The Transposition Rate Has Little Influence on the Plateauing Level of the P-element |
title | The Transposition Rate Has Little Influence on the Plateauing Level of the P-element |
title_full | The Transposition Rate Has Little Influence on the Plateauing Level of the P-element |
title_fullStr | The Transposition Rate Has Little Influence on the Plateauing Level of the P-element |
title_full_unstemmed | The Transposition Rate Has Little Influence on the Plateauing Level of the P-element |
title_short | The Transposition Rate Has Little Influence on the Plateauing Level of the P-element |
title_sort | transposition rate has little influence on the plateauing level of the p-element |
topic | Discoveries |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9254008/ https://www.ncbi.nlm.nih.gov/pubmed/35731857 http://dx.doi.org/10.1093/molbev/msac141 |
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