Cargando…

Low-cost prediction of molecular and transition state partition functions via machine learning

We have generated an open-source dataset of over 30 000 organic chemistry gas phase partition functions. With this data, a machine learning deep neural network estimator was trained to predict partition functions of unknown organic chemistry gas phase transition states. This estimator only relies on...

Descripción completa

Detalles Bibliográficos
Autores principales: Komp, Evan, Valleau, Stéphanie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9258343/
https://www.ncbi.nlm.nih.gov/pubmed/35865893
http://dx.doi.org/10.1039/d2sc01334g
_version_ 1784741529942753280
author Komp, Evan
Valleau, Stéphanie
author_facet Komp, Evan
Valleau, Stéphanie
author_sort Komp, Evan
collection PubMed
description We have generated an open-source dataset of over 30 000 organic chemistry gas phase partition functions. With this data, a machine learning deep neural network estimator was trained to predict partition functions of unknown organic chemistry gas phase transition states. This estimator only relies on reactant and product geometries and partition functions. A second machine learning deep neural network was trained to predict partition functions of chemical species from their geometry. Our models accurately predict the logarithm of test set partition functions with a maximum mean absolute error of 2.7%. Thus, this approach provides a means to reduce the cost of computing reaction rate constants ab initio. The models were also used to compute transition state theory reaction rate constant prefactors and the results were in quantitative agreement with the corresponding ab initio calculations with an accuracy of 98.3% on the log scale.
format Online
Article
Text
id pubmed-9258343
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher The Royal Society of Chemistry
record_format MEDLINE/PubMed
spelling pubmed-92583432022-07-20 Low-cost prediction of molecular and transition state partition functions via machine learning Komp, Evan Valleau, Stéphanie Chem Sci Chemistry We have generated an open-source dataset of over 30 000 organic chemistry gas phase partition functions. With this data, a machine learning deep neural network estimator was trained to predict partition functions of unknown organic chemistry gas phase transition states. This estimator only relies on reactant and product geometries and partition functions. A second machine learning deep neural network was trained to predict partition functions of chemical species from their geometry. Our models accurately predict the logarithm of test set partition functions with a maximum mean absolute error of 2.7%. Thus, this approach provides a means to reduce the cost of computing reaction rate constants ab initio. The models were also used to compute transition state theory reaction rate constant prefactors and the results were in quantitative agreement with the corresponding ab initio calculations with an accuracy of 98.3% on the log scale. The Royal Society of Chemistry 2022-06-14 /pmc/articles/PMC9258343/ /pubmed/35865893 http://dx.doi.org/10.1039/d2sc01334g Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/
spellingShingle Chemistry
Komp, Evan
Valleau, Stéphanie
Low-cost prediction of molecular and transition state partition functions via machine learning
title Low-cost prediction of molecular and transition state partition functions via machine learning
title_full Low-cost prediction of molecular and transition state partition functions via machine learning
title_fullStr Low-cost prediction of molecular and transition state partition functions via machine learning
title_full_unstemmed Low-cost prediction of molecular and transition state partition functions via machine learning
title_short Low-cost prediction of molecular and transition state partition functions via machine learning
title_sort low-cost prediction of molecular and transition state partition functions via machine learning
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9258343/
https://www.ncbi.nlm.nih.gov/pubmed/35865893
http://dx.doi.org/10.1039/d2sc01334g
work_keys_str_mv AT kompevan lowcostpredictionofmolecularandtransitionstatepartitionfunctionsviamachinelearning
AT valleaustephanie lowcostpredictionofmolecularandtransitionstatepartitionfunctionsviamachinelearning