Cargando…
Low-cost prediction of molecular and transition state partition functions via machine learning
We have generated an open-source dataset of over 30 000 organic chemistry gas phase partition functions. With this data, a machine learning deep neural network estimator was trained to predict partition functions of unknown organic chemistry gas phase transition states. This estimator only relies on...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9258343/ https://www.ncbi.nlm.nih.gov/pubmed/35865893 http://dx.doi.org/10.1039/d2sc01334g |
_version_ | 1784741529942753280 |
---|---|
author | Komp, Evan Valleau, Stéphanie |
author_facet | Komp, Evan Valleau, Stéphanie |
author_sort | Komp, Evan |
collection | PubMed |
description | We have generated an open-source dataset of over 30 000 organic chemistry gas phase partition functions. With this data, a machine learning deep neural network estimator was trained to predict partition functions of unknown organic chemistry gas phase transition states. This estimator only relies on reactant and product geometries and partition functions. A second machine learning deep neural network was trained to predict partition functions of chemical species from their geometry. Our models accurately predict the logarithm of test set partition functions with a maximum mean absolute error of 2.7%. Thus, this approach provides a means to reduce the cost of computing reaction rate constants ab initio. The models were also used to compute transition state theory reaction rate constant prefactors and the results were in quantitative agreement with the corresponding ab initio calculations with an accuracy of 98.3% on the log scale. |
format | Online Article Text |
id | pubmed-9258343 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-92583432022-07-20 Low-cost prediction of molecular and transition state partition functions via machine learning Komp, Evan Valleau, Stéphanie Chem Sci Chemistry We have generated an open-source dataset of over 30 000 organic chemistry gas phase partition functions. With this data, a machine learning deep neural network estimator was trained to predict partition functions of unknown organic chemistry gas phase transition states. This estimator only relies on reactant and product geometries and partition functions. A second machine learning deep neural network was trained to predict partition functions of chemical species from their geometry. Our models accurately predict the logarithm of test set partition functions with a maximum mean absolute error of 2.7%. Thus, this approach provides a means to reduce the cost of computing reaction rate constants ab initio. The models were also used to compute transition state theory reaction rate constant prefactors and the results were in quantitative agreement with the corresponding ab initio calculations with an accuracy of 98.3% on the log scale. The Royal Society of Chemistry 2022-06-14 /pmc/articles/PMC9258343/ /pubmed/35865893 http://dx.doi.org/10.1039/d2sc01334g Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/ |
spellingShingle | Chemistry Komp, Evan Valleau, Stéphanie Low-cost prediction of molecular and transition state partition functions via machine learning |
title | Low-cost prediction of molecular and transition state partition functions via machine learning |
title_full | Low-cost prediction of molecular and transition state partition functions via machine learning |
title_fullStr | Low-cost prediction of molecular and transition state partition functions via machine learning |
title_full_unstemmed | Low-cost prediction of molecular and transition state partition functions via machine learning |
title_short | Low-cost prediction of molecular and transition state partition functions via machine learning |
title_sort | low-cost prediction of molecular and transition state partition functions via machine learning |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9258343/ https://www.ncbi.nlm.nih.gov/pubmed/35865893 http://dx.doi.org/10.1039/d2sc01334g |
work_keys_str_mv | AT kompevan lowcostpredictionofmolecularandtransitionstatepartitionfunctionsviamachinelearning AT valleaustephanie lowcostpredictionofmolecularandtransitionstatepartitionfunctionsviamachinelearning |