WormBase single-cell tools

 : We present two web apps for interactively performing common tasks with single-cell RNA sequencing data: scdefg for differential expression and wormcells-viz for visualization of gene expression. We deployed these tools with public Caenorhabditis elegans datasets curated by WormBase at https://sin...

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Detalles Bibliográficos
Autores principales: da Veiga Beltrame, Eduardo, Arnaboldi, Valerio, Sternberg, Paul W
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Application Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9258504/
https://www.ncbi.nlm.nih.gov/pubmed/35814290
http://dx.doi.org/10.1093/bioadv/vbac018
Descripción
Sumario: : We present two web apps for interactively performing common tasks with single-cell RNA sequencing data: scdefg for differential expression and wormcells-viz for visualization of gene expression. We deployed these tools with public Caenorhabditis elegans datasets curated by WormBase at https://single-cell.wormbase.org. Source code for deploying these tools with other datasets is available at https://github.com/WormBase/scdefg and https://github.com/WormBase/wormcells-viz. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics Advances online.

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