WormBase single-cell tools

 : We present two web apps for interactively performing common tasks with single-cell RNA sequencing data: scdefg for differential expression and wormcells-viz for visualization of gene expression. We deployed these tools with public Caenorhabditis elegans datasets curated by WormBase at https://sin...

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Detalles Bibliográficos
Autores principales: da Veiga Beltrame, Eduardo, Arnaboldi, Valerio, Sternberg, Paul W
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Application Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9258504/
https://www.ncbi.nlm.nih.gov/pubmed/35814290
http://dx.doi.org/10.1093/bioadv/vbac018
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author da Veiga Beltrame, Eduardo
Arnaboldi, Valerio
Sternberg, Paul W
author_facet da Veiga Beltrame, Eduardo
Arnaboldi, Valerio
Sternberg, Paul W
author_sort da Veiga Beltrame, Eduardo
collection PubMed
description  : We present two web apps for interactively performing common tasks with single-cell RNA sequencing data: scdefg for differential expression and wormcells-viz for visualization of gene expression. We deployed these tools with public Caenorhabditis elegans datasets curated by WormBase at https://single-cell.wormbase.org. Source code for deploying these tools with other datasets is available at https://github.com/WormBase/scdefg and https://github.com/WormBase/wormcells-viz. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics Advances online.
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spelling pubmed-92585042022-07-06 WormBase single-cell tools da Veiga Beltrame, Eduardo Arnaboldi, Valerio Sternberg, Paul W Bioinform Adv Application Note  : We present two web apps for interactively performing common tasks with single-cell RNA sequencing data: scdefg for differential expression and wormcells-viz for visualization of gene expression. We deployed these tools with public Caenorhabditis elegans datasets curated by WormBase at https://single-cell.wormbase.org. Source code for deploying these tools with other datasets is available at https://github.com/WormBase/scdefg and https://github.com/WormBase/wormcells-viz. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics Advances online. Oxford University Press 2022-03-28 /pmc/articles/PMC9258504/ /pubmed/35814290 http://dx.doi.org/10.1093/bioadv/vbac018 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Application Note
da Veiga Beltrame, Eduardo
Arnaboldi, Valerio
Sternberg, Paul W
WormBase single-cell tools
title WormBase single-cell tools
title_full WormBase single-cell tools
title_fullStr WormBase single-cell tools
title_full_unstemmed WormBase single-cell tools
title_short WormBase single-cell tools
title_sort wormbase single-cell tools
topic Application Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9258504/
https://www.ncbi.nlm.nih.gov/pubmed/35814290
http://dx.doi.org/10.1093/bioadv/vbac018
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AT sternbergpaulw wormbasesinglecelltools

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