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WormBase single-cell tools
: We present two web apps for interactively performing common tasks with single-cell RNA sequencing data: scdefg for differential expression and wormcells-viz for visualization of gene expression. We deployed these tools with public Caenorhabditis elegans datasets curated by WormBase at https://sin...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9258504/ https://www.ncbi.nlm.nih.gov/pubmed/35814290 http://dx.doi.org/10.1093/bioadv/vbac018 |
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author | da Veiga Beltrame, Eduardo Arnaboldi, Valerio Sternberg, Paul W |
author_facet | da Veiga Beltrame, Eduardo Arnaboldi, Valerio Sternberg, Paul W |
author_sort | da Veiga Beltrame, Eduardo |
collection | PubMed |
description | : We present two web apps for interactively performing common tasks with single-cell RNA sequencing data: scdefg for differential expression and wormcells-viz for visualization of gene expression. We deployed these tools with public Caenorhabditis elegans datasets curated by WormBase at https://single-cell.wormbase.org. Source code for deploying these tools with other datasets is available at https://github.com/WormBase/scdefg and https://github.com/WormBase/wormcells-viz. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics Advances online. |
format | Online Article Text |
id | pubmed-9258504 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-92585042022-07-06 WormBase single-cell tools da Veiga Beltrame, Eduardo Arnaboldi, Valerio Sternberg, Paul W Bioinform Adv Application Note : We present two web apps for interactively performing common tasks with single-cell RNA sequencing data: scdefg for differential expression and wormcells-viz for visualization of gene expression. We deployed these tools with public Caenorhabditis elegans datasets curated by WormBase at https://single-cell.wormbase.org. Source code for deploying these tools with other datasets is available at https://github.com/WormBase/scdefg and https://github.com/WormBase/wormcells-viz. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics Advances online. Oxford University Press 2022-03-28 /pmc/articles/PMC9258504/ /pubmed/35814290 http://dx.doi.org/10.1093/bioadv/vbac018 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Application Note da Veiga Beltrame, Eduardo Arnaboldi, Valerio Sternberg, Paul W WormBase single-cell tools |
title | WormBase single-cell tools |
title_full | WormBase single-cell tools |
title_fullStr | WormBase single-cell tools |
title_full_unstemmed | WormBase single-cell tools |
title_short | WormBase single-cell tools |
title_sort | wormbase single-cell tools |
topic | Application Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9258504/ https://www.ncbi.nlm.nih.gov/pubmed/35814290 http://dx.doi.org/10.1093/bioadv/vbac018 |
work_keys_str_mv | AT daveigabeltrameeduardo wormbasesinglecelltools AT arnaboldivalerio wormbasesinglecelltools AT sternbergpaulw wormbasesinglecelltools |