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Genome of a novel Sediminibacterium discovered in association with two species of freshwater cyanobacteria from streams in Southern California
Here, we report the discovery of a novel Sediminibacterium sequenced from laboratory cultures of freshwater stream cyanobacteria from sites in Southern California, grown in BG11 medium. Our genome-wide analyses reveal a highly contiguous and complete genome (97% BUSCO) that is placed within sedimini...
| Autores principales: | , , , , , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Oxford University Press
2022
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9258536/ https://www.ncbi.nlm.nih.gov/pubmed/35639673 http://dx.doi.org/10.1093/g3journal/jkac123 |
| _version_ | 1784741575235993600 |
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| author | Sethuraman, Arun Stancheva, Rosalina Sanders, Ciara Caceres, Lakme Castro, David Hausknecht-Buss, Hannah Henry, Simone Johansen, Haven Kasler, Antolette Lastor, Sandy Massaro, Isabelle Mekuria, Immanuel Moron-Solano, Andrea Read, Niki Vengerova, Gretchen Zhang, Andrew Zhang, Xiaoyu Read, Betsy |
| author_facet | Sethuraman, Arun Stancheva, Rosalina Sanders, Ciara Caceres, Lakme Castro, David Hausknecht-Buss, Hannah Henry, Simone Johansen, Haven Kasler, Antolette Lastor, Sandy Massaro, Isabelle Mekuria, Immanuel Moron-Solano, Andrea Read, Niki Vengerova, Gretchen Zhang, Andrew Zhang, Xiaoyu Read, Betsy |
| author_sort | Sethuraman, Arun |
| collection | PubMed |
| description | Here, we report the discovery of a novel Sediminibacterium sequenced from laboratory cultures of freshwater stream cyanobacteria from sites in Southern California, grown in BG11 medium. Our genome-wide analyses reveal a highly contiguous and complete genome (97% BUSCO) that is placed within sediminibacterial clades in phylogenomic analyses. Functional annotation indicates the presence of genes that could be involved in mutualistic/commensal relationship with associated cyanobacterial hosts. |
| format | Online Article Text |
| id | pubmed-9258536 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2022 |
| publisher | Oxford University Press |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-92585362022-07-07 Genome of a novel Sediminibacterium discovered in association with two species of freshwater cyanobacteria from streams in Southern California Sethuraman, Arun Stancheva, Rosalina Sanders, Ciara Caceres, Lakme Castro, David Hausknecht-Buss, Hannah Henry, Simone Johansen, Haven Kasler, Antolette Lastor, Sandy Massaro, Isabelle Mekuria, Immanuel Moron-Solano, Andrea Read, Niki Vengerova, Gretchen Zhang, Andrew Zhang, Xiaoyu Read, Betsy G3 (Bethesda) Genome Report Here, we report the discovery of a novel Sediminibacterium sequenced from laboratory cultures of freshwater stream cyanobacteria from sites in Southern California, grown in BG11 medium. Our genome-wide analyses reveal a highly contiguous and complete genome (97% BUSCO) that is placed within sediminibacterial clades in phylogenomic analyses. Functional annotation indicates the presence of genes that could be involved in mutualistic/commensal relationship with associated cyanobacterial hosts. Oxford University Press 2022-05-26 /pmc/articles/PMC9258536/ /pubmed/35639673 http://dx.doi.org/10.1093/g3journal/jkac123 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Genetics Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Genome Report Sethuraman, Arun Stancheva, Rosalina Sanders, Ciara Caceres, Lakme Castro, David Hausknecht-Buss, Hannah Henry, Simone Johansen, Haven Kasler, Antolette Lastor, Sandy Massaro, Isabelle Mekuria, Immanuel Moron-Solano, Andrea Read, Niki Vengerova, Gretchen Zhang, Andrew Zhang, Xiaoyu Read, Betsy Genome of a novel Sediminibacterium discovered in association with two species of freshwater cyanobacteria from streams in Southern California |
| title | Genome of a novel Sediminibacterium discovered in association with two species of freshwater cyanobacteria from streams in Southern California |
| title_full | Genome of a novel Sediminibacterium discovered in association with two species of freshwater cyanobacteria from streams in Southern California |
| title_fullStr | Genome of a novel Sediminibacterium discovered in association with two species of freshwater cyanobacteria from streams in Southern California |
| title_full_unstemmed | Genome of a novel Sediminibacterium discovered in association with two species of freshwater cyanobacteria from streams in Southern California |
| title_short | Genome of a novel Sediminibacterium discovered in association with two species of freshwater cyanobacteria from streams in Southern California |
| title_sort | genome of a novel sediminibacterium discovered in association with two species of freshwater cyanobacteria from streams in southern california |
| topic | Genome Report |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9258536/ https://www.ncbi.nlm.nih.gov/pubmed/35639673 http://dx.doi.org/10.1093/g3journal/jkac123 |
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