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Multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement
Methods of multivariate analysis is a powerful approach to assist the initial stages of crops genetic improvement, particularly, because it allows many traits to be evaluated simultaneously. In this study, heat-tolerant genotypes have been selected by analyzing phenotypic diversity, direct and indir...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9259706/ https://www.ncbi.nlm.nih.gov/pubmed/35794228 http://dx.doi.org/10.1038/s41598-022-15688-4 |
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author | Barth, Eneide de Resende, Juliano Tadeu Vilela Mariguele, Keny Henrique de Resende, Marcos Deon Vilela da Silva, André Luiz Biscaia Ribeiro Ru, Sushan |
author_facet | Barth, Eneide de Resende, Juliano Tadeu Vilela Mariguele, Keny Henrique de Resende, Marcos Deon Vilela da Silva, André Luiz Biscaia Ribeiro Ru, Sushan |
author_sort | Barth, Eneide |
collection | PubMed |
description | Methods of multivariate analysis is a powerful approach to assist the initial stages of crops genetic improvement, particularly, because it allows many traits to be evaluated simultaneously. In this study, heat-tolerant genotypes have been selected by analyzing phenotypic diversity, direct and indirect relationships among traits were identified, and four selection indices compared. Diversity was estimated using K-means clustering with the number of clusters determined by the Elbow method, and the relationship among traits was quantified by path analysis. Parametric and non-parametric indices were applied to selected genotypes using the magnitude of genotypic variance, heritability, genotypic coefficient of variance, and assigned economic weight as selection criteria. The variability among materials led to the formation of two non-overlapping clusters containing 40 and 154 genotypes. Strong to moderate correlations were found between traits with direct effect of the number of commercial fruit on the mass of commercial fruit. The Smith and Hazel index showed the greatest total gains for all criteria; however, concerning the biochemical traits, the Mulamba and Mock index showed the highest magnitudes of predicted gains. Overall, the K-means clustering, correlation analysis, and path analysis complement the use of selection indices, allowing for selection of genotypes with better balance among the assessed traits. |
format | Online Article Text |
id | pubmed-9259706 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-92597062022-07-08 Multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement Barth, Eneide de Resende, Juliano Tadeu Vilela Mariguele, Keny Henrique de Resende, Marcos Deon Vilela da Silva, André Luiz Biscaia Ribeiro Ru, Sushan Sci Rep Article Methods of multivariate analysis is a powerful approach to assist the initial stages of crops genetic improvement, particularly, because it allows many traits to be evaluated simultaneously. In this study, heat-tolerant genotypes have been selected by analyzing phenotypic diversity, direct and indirect relationships among traits were identified, and four selection indices compared. Diversity was estimated using K-means clustering with the number of clusters determined by the Elbow method, and the relationship among traits was quantified by path analysis. Parametric and non-parametric indices were applied to selected genotypes using the magnitude of genotypic variance, heritability, genotypic coefficient of variance, and assigned economic weight as selection criteria. The variability among materials led to the formation of two non-overlapping clusters containing 40 and 154 genotypes. Strong to moderate correlations were found between traits with direct effect of the number of commercial fruit on the mass of commercial fruit. The Smith and Hazel index showed the greatest total gains for all criteria; however, concerning the biochemical traits, the Mulamba and Mock index showed the highest magnitudes of predicted gains. Overall, the K-means clustering, correlation analysis, and path analysis complement the use of selection indices, allowing for selection of genotypes with better balance among the assessed traits. Nature Publishing Group UK 2022-07-06 /pmc/articles/PMC9259706/ /pubmed/35794228 http://dx.doi.org/10.1038/s41598-022-15688-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Barth, Eneide de Resende, Juliano Tadeu Vilela Mariguele, Keny Henrique de Resende, Marcos Deon Vilela da Silva, André Luiz Biscaia Ribeiro Ru, Sushan Multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement |
title | Multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement |
title_full | Multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement |
title_fullStr | Multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement |
title_full_unstemmed | Multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement |
title_short | Multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement |
title_sort | multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9259706/ https://www.ncbi.nlm.nih.gov/pubmed/35794228 http://dx.doi.org/10.1038/s41598-022-15688-4 |
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