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Multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement

Methods of multivariate analysis is a powerful approach to assist the initial stages of crops genetic improvement, particularly, because it allows many traits to be evaluated simultaneously. In this study, heat-tolerant genotypes have been selected by analyzing phenotypic diversity, direct and indir...

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Autores principales: Barth, Eneide, de Resende, Juliano Tadeu Vilela, Mariguele, Keny Henrique, de Resende, Marcos Deon Vilela, da Silva, André Luiz Biscaia Ribeiro, Ru, Sushan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9259706/
https://www.ncbi.nlm.nih.gov/pubmed/35794228
http://dx.doi.org/10.1038/s41598-022-15688-4
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author Barth, Eneide
de Resende, Juliano Tadeu Vilela
Mariguele, Keny Henrique
de Resende, Marcos Deon Vilela
da Silva, André Luiz Biscaia Ribeiro
Ru, Sushan
author_facet Barth, Eneide
de Resende, Juliano Tadeu Vilela
Mariguele, Keny Henrique
de Resende, Marcos Deon Vilela
da Silva, André Luiz Biscaia Ribeiro
Ru, Sushan
author_sort Barth, Eneide
collection PubMed
description Methods of multivariate analysis is a powerful approach to assist the initial stages of crops genetic improvement, particularly, because it allows many traits to be evaluated simultaneously. In this study, heat-tolerant genotypes have been selected by analyzing phenotypic diversity, direct and indirect relationships among traits were identified, and four selection indices compared. Diversity was estimated using K-means clustering with the number of clusters determined by the Elbow method, and the relationship among traits was quantified by path analysis. Parametric and non-parametric indices were applied to selected genotypes using the magnitude of genotypic variance, heritability, genotypic coefficient of variance, and assigned economic weight as selection criteria. The variability among materials led to the formation of two non-overlapping clusters containing 40 and 154 genotypes. Strong to moderate correlations were found between traits with direct effect of the number of commercial fruit on the mass of commercial fruit. The Smith and Hazel index showed the greatest total gains for all criteria; however, concerning the biochemical traits, the Mulamba and Mock index showed the highest magnitudes of predicted gains. Overall, the K-means clustering, correlation analysis, and path analysis complement the use of selection indices, allowing for selection of genotypes with better balance among the assessed traits.
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spelling pubmed-92597062022-07-08 Multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement Barth, Eneide de Resende, Juliano Tadeu Vilela Mariguele, Keny Henrique de Resende, Marcos Deon Vilela da Silva, André Luiz Biscaia Ribeiro Ru, Sushan Sci Rep Article Methods of multivariate analysis is a powerful approach to assist the initial stages of crops genetic improvement, particularly, because it allows many traits to be evaluated simultaneously. In this study, heat-tolerant genotypes have been selected by analyzing phenotypic diversity, direct and indirect relationships among traits were identified, and four selection indices compared. Diversity was estimated using K-means clustering with the number of clusters determined by the Elbow method, and the relationship among traits was quantified by path analysis. Parametric and non-parametric indices were applied to selected genotypes using the magnitude of genotypic variance, heritability, genotypic coefficient of variance, and assigned economic weight as selection criteria. The variability among materials led to the formation of two non-overlapping clusters containing 40 and 154 genotypes. Strong to moderate correlations were found between traits with direct effect of the number of commercial fruit on the mass of commercial fruit. The Smith and Hazel index showed the greatest total gains for all criteria; however, concerning the biochemical traits, the Mulamba and Mock index showed the highest magnitudes of predicted gains. Overall, the K-means clustering, correlation analysis, and path analysis complement the use of selection indices, allowing for selection of genotypes with better balance among the assessed traits. Nature Publishing Group UK 2022-07-06 /pmc/articles/PMC9259706/ /pubmed/35794228 http://dx.doi.org/10.1038/s41598-022-15688-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Barth, Eneide
de Resende, Juliano Tadeu Vilela
Mariguele, Keny Henrique
de Resende, Marcos Deon Vilela
da Silva, André Luiz Biscaia Ribeiro
Ru, Sushan
Multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement
title Multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement
title_full Multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement
title_fullStr Multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement
title_full_unstemmed Multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement
title_short Multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement
title_sort multivariate analysis methods improve the selection of strawberry genotypes with low cold requirement
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9259706/
https://www.ncbi.nlm.nih.gov/pubmed/35794228
http://dx.doi.org/10.1038/s41598-022-15688-4
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