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An Analysis of Natural Variation Reveals That OsFLA2 Controls Flag Leaf Angle in Rice (Oryza sativa L.)
Flag leaf angle (FLA) is an important outcrossing trait affecting the hybrid seed production in rice (Oryza sativa L.). Natural variation of FLA has been reported in rice, but the molecular basis for this variation is largely unknown. In this study, we investigated the phenotypic values of FLA in 35...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9260283/ https://www.ncbi.nlm.nih.gov/pubmed/35812967 http://dx.doi.org/10.3389/fpls.2022.906912 |
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author | Jiang, Jianhua Zhang, Yuanqing Li, Yulong Hu, Changmin Xu, Lei Zhang, Ying Wang, Dezheng Hong, Delin Dang, Xiaojing |
author_facet | Jiang, Jianhua Zhang, Yuanqing Li, Yulong Hu, Changmin Xu, Lei Zhang, Ying Wang, Dezheng Hong, Delin Dang, Xiaojing |
author_sort | Jiang, Jianhua |
collection | PubMed |
description | Flag leaf angle (FLA) is an important outcrossing trait affecting the hybrid seed production in rice (Oryza sativa L.). Natural variation of FLA has been reported in rice, but the molecular basis for this variation is largely unknown. In this study, we investigated the phenotypic values of FLA in 353 rice natural accessions in six environments, which indicated that there was abundant phenotypic variation. We performed a genome-wide association study on FLA using 1.3 million single nucleotide polymorphisms (SNPs). A total of six quantitative trait loci (QTLs) were identified significantly associated with FLA, of which five were located in previously reported QTLs/genes and one was novel. We identified two causal gene loci for FLA, namely, OsFLA6 and OsFLA2; OsFLA6 was co-localized with the gene OsLIC. In addition, the accessions with large and small FLA values have corresponding high and low OsFLA6 expressions. OsFLA2(TT) allele could increase significantly the seed setting percentage in hybrid F(1) seed production by field experiment. We also confirmed that the allele OsFLA2(TT) increased the FLA compared with that of the isogenic line carrying allele OsFLA2(CC) by transgenic complementation experiment. The allele frequencies of OsFLA6(GG) and OsFLA2(TT) decreased gradually with an increase in latitude in the Northern Hemisphere. Our results should facilitate the improvement of FLA of parents of hybrid rice. |
format | Online Article Text |
id | pubmed-9260283 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92602832022-07-08 An Analysis of Natural Variation Reveals That OsFLA2 Controls Flag Leaf Angle in Rice (Oryza sativa L.) Jiang, Jianhua Zhang, Yuanqing Li, Yulong Hu, Changmin Xu, Lei Zhang, Ying Wang, Dezheng Hong, Delin Dang, Xiaojing Front Plant Sci Plant Science Flag leaf angle (FLA) is an important outcrossing trait affecting the hybrid seed production in rice (Oryza sativa L.). Natural variation of FLA has been reported in rice, but the molecular basis for this variation is largely unknown. In this study, we investigated the phenotypic values of FLA in 353 rice natural accessions in six environments, which indicated that there was abundant phenotypic variation. We performed a genome-wide association study on FLA using 1.3 million single nucleotide polymorphisms (SNPs). A total of six quantitative trait loci (QTLs) were identified significantly associated with FLA, of which five were located in previously reported QTLs/genes and one was novel. We identified two causal gene loci for FLA, namely, OsFLA6 and OsFLA2; OsFLA6 was co-localized with the gene OsLIC. In addition, the accessions with large and small FLA values have corresponding high and low OsFLA6 expressions. OsFLA2(TT) allele could increase significantly the seed setting percentage in hybrid F(1) seed production by field experiment. We also confirmed that the allele OsFLA2(TT) increased the FLA compared with that of the isogenic line carrying allele OsFLA2(CC) by transgenic complementation experiment. The allele frequencies of OsFLA6(GG) and OsFLA2(TT) decreased gradually with an increase in latitude in the Northern Hemisphere. Our results should facilitate the improvement of FLA of parents of hybrid rice. Frontiers Media S.A. 2022-06-23 /pmc/articles/PMC9260283/ /pubmed/35812967 http://dx.doi.org/10.3389/fpls.2022.906912 Text en Copyright © 2022 Jiang, Zhang, Li, Hu, Xu, Zhang, Wang, Hong and Dang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Jiang, Jianhua Zhang, Yuanqing Li, Yulong Hu, Changmin Xu, Lei Zhang, Ying Wang, Dezheng Hong, Delin Dang, Xiaojing An Analysis of Natural Variation Reveals That OsFLA2 Controls Flag Leaf Angle in Rice (Oryza sativa L.) |
title | An Analysis of Natural Variation Reveals That OsFLA2 Controls Flag Leaf Angle in Rice (Oryza sativa L.) |
title_full | An Analysis of Natural Variation Reveals That OsFLA2 Controls Flag Leaf Angle in Rice (Oryza sativa L.) |
title_fullStr | An Analysis of Natural Variation Reveals That OsFLA2 Controls Flag Leaf Angle in Rice (Oryza sativa L.) |
title_full_unstemmed | An Analysis of Natural Variation Reveals That OsFLA2 Controls Flag Leaf Angle in Rice (Oryza sativa L.) |
title_short | An Analysis of Natural Variation Reveals That OsFLA2 Controls Flag Leaf Angle in Rice (Oryza sativa L.) |
title_sort | analysis of natural variation reveals that osfla2 controls flag leaf angle in rice (oryza sativa l.) |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9260283/ https://www.ncbi.nlm.nih.gov/pubmed/35812967 http://dx.doi.org/10.3389/fpls.2022.906912 |
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