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Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC

Human immune system functions over an entire lifetime, yet how and why the immune system becomes less effective with age are not well understood. Here, we characterize peripheral blood mononuclear cell transcriptome from 132 healthy adults with 21–90 years of age using the weighted gene correlation...

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Autores principales: Hu, Yang, Xu, Yudai, Mao, Lipeng, Lei, Wen, Xiang, Jian, Gao, Lijuan, Jiang, Junxing, Huang, Li`an, Luo, Oscar Junhong, Duan, Jinhai, Chen, Guobing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9261324/
https://www.ncbi.nlm.nih.gov/pubmed/35822054
http://dx.doi.org/10.3389/fragi.2021.797040
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author Hu, Yang
Xu, Yudai
Mao, Lipeng
Lei, Wen
Xiang, Jian
Gao, Lijuan
Jiang, Junxing
Huang, Li`an
Luo, Oscar Junhong
Duan, Jinhai
Chen, Guobing
author_facet Hu, Yang
Xu, Yudai
Mao, Lipeng
Lei, Wen
Xiang, Jian
Gao, Lijuan
Jiang, Junxing
Huang, Li`an
Luo, Oscar Junhong
Duan, Jinhai
Chen, Guobing
author_sort Hu, Yang
collection PubMed
description Human immune system functions over an entire lifetime, yet how and why the immune system becomes less effective with age are not well understood. Here, we characterize peripheral blood mononuclear cell transcriptome from 132 healthy adults with 21–90 years of age using the weighted gene correlation network analyses. In our study, 113 Caucasian from the 10KIP database and RNA-seq data of 19 Asian (Chinese) are used to explore the differential co-expression genes in PBMC aging. These two dataset reveal a set of insightful gene expression modules and representative gene biomarkers for human immune system aging from Asian and Caucasian ancestry, respectively. Among them, the aging-specific modules may show an age-related gene expression variation spike around early-seventies. In addition, we find the top hub genes including NUDT7, CLPB, OXNAD1, and MLLT3 are shared between Asian and Caucasian aging related modules and further validated in human PBMCs from different age groups. Overall, the impact of age and race on transcriptional variation elucidated from this study may provide insights into the transcriptional driver of immune aging.
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spelling pubmed-92613242022-07-11 Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC Hu, Yang Xu, Yudai Mao, Lipeng Lei, Wen Xiang, Jian Gao, Lijuan Jiang, Junxing Huang, Li`an Luo, Oscar Junhong Duan, Jinhai Chen, Guobing Front Aging Aging Human immune system functions over an entire lifetime, yet how and why the immune system becomes less effective with age are not well understood. Here, we characterize peripheral blood mononuclear cell transcriptome from 132 healthy adults with 21–90 years of age using the weighted gene correlation network analyses. In our study, 113 Caucasian from the 10KIP database and RNA-seq data of 19 Asian (Chinese) are used to explore the differential co-expression genes in PBMC aging. These two dataset reveal a set of insightful gene expression modules and representative gene biomarkers for human immune system aging from Asian and Caucasian ancestry, respectively. Among them, the aging-specific modules may show an age-related gene expression variation spike around early-seventies. In addition, we find the top hub genes including NUDT7, CLPB, OXNAD1, and MLLT3 are shared between Asian and Caucasian aging related modules and further validated in human PBMCs from different age groups. Overall, the impact of age and race on transcriptional variation elucidated from this study may provide insights into the transcriptional driver of immune aging. Frontiers Media S.A. 2022-02-03 /pmc/articles/PMC9261324/ /pubmed/35822054 http://dx.doi.org/10.3389/fragi.2021.797040 Text en Copyright © 2022 Hu, Xu, Mao, Lei, Xiang, Gao, Jiang, Huang, Luo, Duan and Chen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Aging
Hu, Yang
Xu, Yudai
Mao, Lipeng
Lei, Wen
Xiang, Jian
Gao, Lijuan
Jiang, Junxing
Huang, Li`an
Luo, Oscar Junhong
Duan, Jinhai
Chen, Guobing
Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC
title Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC
title_full Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC
title_fullStr Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC
title_full_unstemmed Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC
title_short Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC
title_sort gene expression analysis reveals age and ethnicity signatures between young and old adults in human pbmc
topic Aging
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9261324/
https://www.ncbi.nlm.nih.gov/pubmed/35822054
http://dx.doi.org/10.3389/fragi.2021.797040
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