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Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC
Human immune system functions over an entire lifetime, yet how and why the immune system becomes less effective with age are not well understood. Here, we characterize peripheral blood mononuclear cell transcriptome from 132 healthy adults with 21–90 years of age using the weighted gene correlation...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9261324/ https://www.ncbi.nlm.nih.gov/pubmed/35822054 http://dx.doi.org/10.3389/fragi.2021.797040 |
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author | Hu, Yang Xu, Yudai Mao, Lipeng Lei, Wen Xiang, Jian Gao, Lijuan Jiang, Junxing Huang, Li`an Luo, Oscar Junhong Duan, Jinhai Chen, Guobing |
author_facet | Hu, Yang Xu, Yudai Mao, Lipeng Lei, Wen Xiang, Jian Gao, Lijuan Jiang, Junxing Huang, Li`an Luo, Oscar Junhong Duan, Jinhai Chen, Guobing |
author_sort | Hu, Yang |
collection | PubMed |
description | Human immune system functions over an entire lifetime, yet how and why the immune system becomes less effective with age are not well understood. Here, we characterize peripheral blood mononuclear cell transcriptome from 132 healthy adults with 21–90 years of age using the weighted gene correlation network analyses. In our study, 113 Caucasian from the 10KIP database and RNA-seq data of 19 Asian (Chinese) are used to explore the differential co-expression genes in PBMC aging. These two dataset reveal a set of insightful gene expression modules and representative gene biomarkers for human immune system aging from Asian and Caucasian ancestry, respectively. Among them, the aging-specific modules may show an age-related gene expression variation spike around early-seventies. In addition, we find the top hub genes including NUDT7, CLPB, OXNAD1, and MLLT3 are shared between Asian and Caucasian aging related modules and further validated in human PBMCs from different age groups. Overall, the impact of age and race on transcriptional variation elucidated from this study may provide insights into the transcriptional driver of immune aging. |
format | Online Article Text |
id | pubmed-9261324 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92613242022-07-11 Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC Hu, Yang Xu, Yudai Mao, Lipeng Lei, Wen Xiang, Jian Gao, Lijuan Jiang, Junxing Huang, Li`an Luo, Oscar Junhong Duan, Jinhai Chen, Guobing Front Aging Aging Human immune system functions over an entire lifetime, yet how and why the immune system becomes less effective with age are not well understood. Here, we characterize peripheral blood mononuclear cell transcriptome from 132 healthy adults with 21–90 years of age using the weighted gene correlation network analyses. In our study, 113 Caucasian from the 10KIP database and RNA-seq data of 19 Asian (Chinese) are used to explore the differential co-expression genes in PBMC aging. These two dataset reveal a set of insightful gene expression modules and representative gene biomarkers for human immune system aging from Asian and Caucasian ancestry, respectively. Among them, the aging-specific modules may show an age-related gene expression variation spike around early-seventies. In addition, we find the top hub genes including NUDT7, CLPB, OXNAD1, and MLLT3 are shared between Asian and Caucasian aging related modules and further validated in human PBMCs from different age groups. Overall, the impact of age and race on transcriptional variation elucidated from this study may provide insights into the transcriptional driver of immune aging. Frontiers Media S.A. 2022-02-03 /pmc/articles/PMC9261324/ /pubmed/35822054 http://dx.doi.org/10.3389/fragi.2021.797040 Text en Copyright © 2022 Hu, Xu, Mao, Lei, Xiang, Gao, Jiang, Huang, Luo, Duan and Chen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Aging Hu, Yang Xu, Yudai Mao, Lipeng Lei, Wen Xiang, Jian Gao, Lijuan Jiang, Junxing Huang, Li`an Luo, Oscar Junhong Duan, Jinhai Chen, Guobing Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC |
title | Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC |
title_full | Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC |
title_fullStr | Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC |
title_full_unstemmed | Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC |
title_short | Gene Expression Analysis Reveals Age and Ethnicity Signatures Between Young and Old Adults in Human PBMC |
title_sort | gene expression analysis reveals age and ethnicity signatures between young and old adults in human pbmc |
topic | Aging |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9261324/ https://www.ncbi.nlm.nih.gov/pubmed/35822054 http://dx.doi.org/10.3389/fragi.2021.797040 |
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