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Most Pathways Can Be Related to the Pathogenesis of Alzheimer’s Disease

Alzheimer’s disease (AD) is a complex neurodegenerative disorder. The relative contribution of the numerous underlying functional mechanisms is poorly understood. To comprehensively understand the context and distribution of pathways that contribute to AD, we performed text-mining to generate an exh...

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Autores principales: Morgan, Sarah L., Naderi, Pourya, Koler, Katjuša, Pita-Juarez, Yered, Prokopenko, Dmitry, Vlachos, Ioannis S., Tanzi, Rudolph E., Bertram, Lars, Hide, Winston A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9263183/
https://www.ncbi.nlm.nih.gov/pubmed/35813951
http://dx.doi.org/10.3389/fnagi.2022.846902
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author Morgan, Sarah L.
Naderi, Pourya
Koler, Katjuša
Pita-Juarez, Yered
Prokopenko, Dmitry
Vlachos, Ioannis S.
Tanzi, Rudolph E.
Bertram, Lars
Hide, Winston A.
author_facet Morgan, Sarah L.
Naderi, Pourya
Koler, Katjuša
Pita-Juarez, Yered
Prokopenko, Dmitry
Vlachos, Ioannis S.
Tanzi, Rudolph E.
Bertram, Lars
Hide, Winston A.
author_sort Morgan, Sarah L.
collection PubMed
description Alzheimer’s disease (AD) is a complex neurodegenerative disorder. The relative contribution of the numerous underlying functional mechanisms is poorly understood. To comprehensively understand the context and distribution of pathways that contribute to AD, we performed text-mining to generate an exhaustive, systematic assessment of the breadth and diversity of biological pathways within a corpus of 206,324 dementia publication abstracts. A total of 91% (325/335) of Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways have publications containing an association via at least 5 studies, while 63% of pathway terms have at least 50 studies providing a clear association with AD. Despite major technological advances, the same set of top-ranked pathways have been consistently related to AD for 30 years, including AD, immune system, metabolic pathways, cholinergic synapse, long-term depression, proteasome, diabetes, cancer, and chemokine signaling. AD pathways studied appear biased: animal model and human subject studies prioritize different AD pathways. Surprisingly, human genetic discoveries and drug targeting are not enriched in the most frequently studied pathways. Our findings suggest that not only is this disorder incredibly complex, but that its functional reach is also nearly global. As a consequence of our study, research results can now be assessed in the context of the wider AD literature, supporting the design of drug therapies that target a broader range of mechanisms. The results of this study can be explored at www.adpathways.org.
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spelling pubmed-92631832022-07-09 Most Pathways Can Be Related to the Pathogenesis of Alzheimer’s Disease Morgan, Sarah L. Naderi, Pourya Koler, Katjuša Pita-Juarez, Yered Prokopenko, Dmitry Vlachos, Ioannis S. Tanzi, Rudolph E. Bertram, Lars Hide, Winston A. Front Aging Neurosci Neuroscience Alzheimer’s disease (AD) is a complex neurodegenerative disorder. The relative contribution of the numerous underlying functional mechanisms is poorly understood. To comprehensively understand the context and distribution of pathways that contribute to AD, we performed text-mining to generate an exhaustive, systematic assessment of the breadth and diversity of biological pathways within a corpus of 206,324 dementia publication abstracts. A total of 91% (325/335) of Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways have publications containing an association via at least 5 studies, while 63% of pathway terms have at least 50 studies providing a clear association with AD. Despite major technological advances, the same set of top-ranked pathways have been consistently related to AD for 30 years, including AD, immune system, metabolic pathways, cholinergic synapse, long-term depression, proteasome, diabetes, cancer, and chemokine signaling. AD pathways studied appear biased: animal model and human subject studies prioritize different AD pathways. Surprisingly, human genetic discoveries and drug targeting are not enriched in the most frequently studied pathways. Our findings suggest that not only is this disorder incredibly complex, but that its functional reach is also nearly global. As a consequence of our study, research results can now be assessed in the context of the wider AD literature, supporting the design of drug therapies that target a broader range of mechanisms. The results of this study can be explored at www.adpathways.org. Frontiers Media S.A. 2022-06-24 /pmc/articles/PMC9263183/ /pubmed/35813951 http://dx.doi.org/10.3389/fnagi.2022.846902 Text en Copyright © 2022 Morgan, Naderi, Koler, Pita-Juarez, Prokopenko, Vlachos, Tanzi, Bertram and Hide. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Morgan, Sarah L.
Naderi, Pourya
Koler, Katjuša
Pita-Juarez, Yered
Prokopenko, Dmitry
Vlachos, Ioannis S.
Tanzi, Rudolph E.
Bertram, Lars
Hide, Winston A.
Most Pathways Can Be Related to the Pathogenesis of Alzheimer’s Disease
title Most Pathways Can Be Related to the Pathogenesis of Alzheimer’s Disease
title_full Most Pathways Can Be Related to the Pathogenesis of Alzheimer’s Disease
title_fullStr Most Pathways Can Be Related to the Pathogenesis of Alzheimer’s Disease
title_full_unstemmed Most Pathways Can Be Related to the Pathogenesis of Alzheimer’s Disease
title_short Most Pathways Can Be Related to the Pathogenesis of Alzheimer’s Disease
title_sort most pathways can be related to the pathogenesis of alzheimer’s disease
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9263183/
https://www.ncbi.nlm.nih.gov/pubmed/35813951
http://dx.doi.org/10.3389/fnagi.2022.846902
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