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Development and Verify of Survival Analysis Models for Chinese Patients With Systemic Lupus Erythematosus
BACKGROUND: The aim of this study is to develop survival analysis models of hospitalized systemic lupus erythematosus (h-SLE) patients in Jiangsu province using data mining techniques to predict patient survival outcomes and survival status. METHODS: In this study, based on 1999–2009 survival data o...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9263294/ https://www.ncbi.nlm.nih.gov/pubmed/35812398 http://dx.doi.org/10.3389/fimmu.2022.900332 |
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author | Geng, Linyu Qu, Wenqiang Liang, Jun Kong, Wei Xu, Xue Pan, Wenyou Liu, Lin Wu, Min Ding, Fuwan Hu, Huaixia Ding, Xiang Wei, Hua Zou, Yaohong Qian, Xian Wang, Meimei Wu, Jian Tao, Juan Tan, Jun Da, Zhanyun Zhang, Miaojia Li, Jing Zhang, Huayong Feng, Xuebing Chen, Jiaqi Sun, Lingyun |
author_facet | Geng, Linyu Qu, Wenqiang Liang, Jun Kong, Wei Xu, Xue Pan, Wenyou Liu, Lin Wu, Min Ding, Fuwan Hu, Huaixia Ding, Xiang Wei, Hua Zou, Yaohong Qian, Xian Wang, Meimei Wu, Jian Tao, Juan Tan, Jun Da, Zhanyun Zhang, Miaojia Li, Jing Zhang, Huayong Feng, Xuebing Chen, Jiaqi Sun, Lingyun |
author_sort | Geng, Linyu |
collection | PubMed |
description | BACKGROUND: The aim of this study is to develop survival analysis models of hospitalized systemic lupus erythematosus (h-SLE) patients in Jiangsu province using data mining techniques to predict patient survival outcomes and survival status. METHODS: In this study, based on 1999–2009 survival data of 2453 hospitalized SLE (h-SLE) patients in Jiangsu Province, we not only used the Cox proportional hazards model to analyze patients’ survival factors, but also used neural network models to predict survival outcomes. We used semi-supervised learning to label the censored data and introduced cost-sensitivity to achieve data augmentation, addressing category imbalance and pseudo label credibility. In addition, the risk score model was developed by logistic regression. RESULTS: The overall accuracy of the survival outcome prediction model exceeded 0.7, and the sensitivity was close to 0.8, and through the comparative analysis of multiple indicators, our model outperformed traditional classifiers. The developed survival risk assessment model based on logistic regression found that there was a clear threshold, i.e., a survival threshold indicating the survival risk of patients, and cardiopulmonary and neuropsychiatric involvement, abnormal blood urea nitrogen levels and alanine aminotransferase level had the greatest impact on patient survival time. In addition, the study developed a graphical user interface (GUI) integrating survival analysis models to assist physicians in diagnosis and treatment. CONCLUSIONS: The proposed survival analysis scheme identifies disease-related pathogenic and prognosis factors, and has the potential to improve the effectiveness of clinical interventions. |
format | Online Article Text |
id | pubmed-9263294 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92632942022-07-09 Development and Verify of Survival Analysis Models for Chinese Patients With Systemic Lupus Erythematosus Geng, Linyu Qu, Wenqiang Liang, Jun Kong, Wei Xu, Xue Pan, Wenyou Liu, Lin Wu, Min Ding, Fuwan Hu, Huaixia Ding, Xiang Wei, Hua Zou, Yaohong Qian, Xian Wang, Meimei Wu, Jian Tao, Juan Tan, Jun Da, Zhanyun Zhang, Miaojia Li, Jing Zhang, Huayong Feng, Xuebing Chen, Jiaqi Sun, Lingyun Front Immunol Immunology BACKGROUND: The aim of this study is to develop survival analysis models of hospitalized systemic lupus erythematosus (h-SLE) patients in Jiangsu province using data mining techniques to predict patient survival outcomes and survival status. METHODS: In this study, based on 1999–2009 survival data of 2453 hospitalized SLE (h-SLE) patients in Jiangsu Province, we not only used the Cox proportional hazards model to analyze patients’ survival factors, but also used neural network models to predict survival outcomes. We used semi-supervised learning to label the censored data and introduced cost-sensitivity to achieve data augmentation, addressing category imbalance and pseudo label credibility. In addition, the risk score model was developed by logistic regression. RESULTS: The overall accuracy of the survival outcome prediction model exceeded 0.7, and the sensitivity was close to 0.8, and through the comparative analysis of multiple indicators, our model outperformed traditional classifiers. The developed survival risk assessment model based on logistic regression found that there was a clear threshold, i.e., a survival threshold indicating the survival risk of patients, and cardiopulmonary and neuropsychiatric involvement, abnormal blood urea nitrogen levels and alanine aminotransferase level had the greatest impact on patient survival time. In addition, the study developed a graphical user interface (GUI) integrating survival analysis models to assist physicians in diagnosis and treatment. CONCLUSIONS: The proposed survival analysis scheme identifies disease-related pathogenic and prognosis factors, and has the potential to improve the effectiveness of clinical interventions. Frontiers Media S.A. 2022-06-24 /pmc/articles/PMC9263294/ /pubmed/35812398 http://dx.doi.org/10.3389/fimmu.2022.900332 Text en Copyright © 2022 Geng, Qu, Liang, Kong, Xu, Pan, Liu, Wu, Ding, Hu, Ding, Wei, Zou, Qian, Wang, Wu, Tao, Tan, Da, Zhang, Li, Zhang, Feng, Chen and Sun https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Geng, Linyu Qu, Wenqiang Liang, Jun Kong, Wei Xu, Xue Pan, Wenyou Liu, Lin Wu, Min Ding, Fuwan Hu, Huaixia Ding, Xiang Wei, Hua Zou, Yaohong Qian, Xian Wang, Meimei Wu, Jian Tao, Juan Tan, Jun Da, Zhanyun Zhang, Miaojia Li, Jing Zhang, Huayong Feng, Xuebing Chen, Jiaqi Sun, Lingyun Development and Verify of Survival Analysis Models for Chinese Patients With Systemic Lupus Erythematosus |
title | Development and Verify of Survival Analysis Models for Chinese Patients With Systemic Lupus Erythematosus |
title_full | Development and Verify of Survival Analysis Models for Chinese Patients With Systemic Lupus Erythematosus |
title_fullStr | Development and Verify of Survival Analysis Models for Chinese Patients With Systemic Lupus Erythematosus |
title_full_unstemmed | Development and Verify of Survival Analysis Models for Chinese Patients With Systemic Lupus Erythematosus |
title_short | Development and Verify of Survival Analysis Models for Chinese Patients With Systemic Lupus Erythematosus |
title_sort | development and verify of survival analysis models for chinese patients with systemic lupus erythematosus |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9263294/ https://www.ncbi.nlm.nih.gov/pubmed/35812398 http://dx.doi.org/10.3389/fimmu.2022.900332 |
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