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Bioinformatics analysis reveals three key genes and four survival genes associated with youth-onset NSCLC
Youth-onset non-small cell lung cancer (NSCLC) is a heterogeneous disease. It has a unique clinicopathology and special genetic background. In this study, three key genes, CDC20, CCNB2, and BUB1, have been identified in youth-onset NSCLC tumor tissues based on the TCGA and GEO cohorts. Functional en...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
De Gruyter
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9263893/ https://www.ncbi.nlm.nih.gov/pubmed/35859798 http://dx.doi.org/10.1515/med-2022-0492 |
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author | Han, Xuan Ren, Peng Ma, Shaohua |
author_facet | Han, Xuan Ren, Peng Ma, Shaohua |
author_sort | Han, Xuan |
collection | PubMed |
description | Youth-onset non-small cell lung cancer (NSCLC) is a heterogeneous disease. It has a unique clinicopathology and special genetic background. In this study, three key genes, CDC20, CCNB2, and BUB1, have been identified in youth-onset NSCLC tumor tissues based on the TCGA and GEO cohorts. Functional enrichment analysis reveals that the “oocyte meiosis,” “cell cycle,” and the “P53 signaling pathway” are significantly enriched. Additionally, four survival genes, including AKAP12, CRIM1, FEN1, and SLC7A11, that affect the prognosis of youth-onset NSCLC patients are identified in this study. Finally, we construct a risk model to predict the overall survival of youth-onset NSCLC patients, the AUC of the risk model in 1, 3, and 5 years of overall survival is 0.808, 0.844, and 0.728. This study aims to provide a novel idea to explore the pathogenic genes of youth-onset NSCLC. |
format | Online Article Text |
id | pubmed-9263893 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | De Gruyter |
record_format | MEDLINE/PubMed |
spelling | pubmed-92638932022-07-19 Bioinformatics analysis reveals three key genes and four survival genes associated with youth-onset NSCLC Han, Xuan Ren, Peng Ma, Shaohua Open Med (Wars) Research Article Youth-onset non-small cell lung cancer (NSCLC) is a heterogeneous disease. It has a unique clinicopathology and special genetic background. In this study, three key genes, CDC20, CCNB2, and BUB1, have been identified in youth-onset NSCLC tumor tissues based on the TCGA and GEO cohorts. Functional enrichment analysis reveals that the “oocyte meiosis,” “cell cycle,” and the “P53 signaling pathway” are significantly enriched. Additionally, four survival genes, including AKAP12, CRIM1, FEN1, and SLC7A11, that affect the prognosis of youth-onset NSCLC patients are identified in this study. Finally, we construct a risk model to predict the overall survival of youth-onset NSCLC patients, the AUC of the risk model in 1, 3, and 5 years of overall survival is 0.808, 0.844, and 0.728. This study aims to provide a novel idea to explore the pathogenic genes of youth-onset NSCLC. De Gruyter 2022-07-06 /pmc/articles/PMC9263893/ /pubmed/35859798 http://dx.doi.org/10.1515/med-2022-0492 Text en © 2022 Xuan Han et al., published by De Gruyter https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License. |
spellingShingle | Research Article Han, Xuan Ren, Peng Ma, Shaohua Bioinformatics analysis reveals three key genes and four survival genes associated with youth-onset NSCLC |
title | Bioinformatics analysis reveals three key genes and four survival genes associated with youth-onset NSCLC |
title_full | Bioinformatics analysis reveals three key genes and four survival genes associated with youth-onset NSCLC |
title_fullStr | Bioinformatics analysis reveals three key genes and four survival genes associated with youth-onset NSCLC |
title_full_unstemmed | Bioinformatics analysis reveals three key genes and four survival genes associated with youth-onset NSCLC |
title_short | Bioinformatics analysis reveals three key genes and four survival genes associated with youth-onset NSCLC |
title_sort | bioinformatics analysis reveals three key genes and four survival genes associated with youth-onset nsclc |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9263893/ https://www.ncbi.nlm.nih.gov/pubmed/35859798 http://dx.doi.org/10.1515/med-2022-0492 |
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