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Automated Rational Design of Metal–Organic Polyhedra
[Image: see text] Metal–organic polyhedra (MOPs) are hybrid organic–inorganic nanomolecules, whose rational design depends on harmonious consideration of chemical complementarity and spatial compatibility between two or more types of chemical building units (CBUs). In this work, we apply knowledge e...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9264355/ https://www.ncbi.nlm.nih.gov/pubmed/35731954 http://dx.doi.org/10.1021/jacs.2c03402 |
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author | Kondinski, Aleksandar Menon, Angiras Nurkowski, Daniel Farazi, Feroz Mosbach, Sebastian Akroyd, Jethro Kraft, Markus |
author_facet | Kondinski, Aleksandar Menon, Angiras Nurkowski, Daniel Farazi, Feroz Mosbach, Sebastian Akroyd, Jethro Kraft, Markus |
author_sort | Kondinski, Aleksandar |
collection | PubMed |
description | [Image: see text] Metal–organic polyhedra (MOPs) are hybrid organic–inorganic nanomolecules, whose rational design depends on harmonious consideration of chemical complementarity and spatial compatibility between two or more types of chemical building units (CBUs). In this work, we apply knowledge engineering technology to automate the derivation of MOP formulations based on existing knowledge. For this purpose we have (i) curated relevant MOP and CBU data; (ii) developed an assembly model concept that embeds rules in the MOP construction; (iii) developed an OntoMOPs ontology that defines MOPs and their key properties; (iv) input agents that populate The World Avatar (TWA) knowledge graph; and (v) input agents that, using information from TWA, derive a list of new constructible MOPs. Our result provides rapid and automated instantiation of MOPs in TWA and unveils the immediate chemical space of known MOPs, thus shedding light on new MOP targets for future investigations. |
format | Online Article Text |
id | pubmed-9264355 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-92643552022-07-09 Automated Rational Design of Metal–Organic Polyhedra Kondinski, Aleksandar Menon, Angiras Nurkowski, Daniel Farazi, Feroz Mosbach, Sebastian Akroyd, Jethro Kraft, Markus J Am Chem Soc [Image: see text] Metal–organic polyhedra (MOPs) are hybrid organic–inorganic nanomolecules, whose rational design depends on harmonious consideration of chemical complementarity and spatial compatibility between two or more types of chemical building units (CBUs). In this work, we apply knowledge engineering technology to automate the derivation of MOP formulations based on existing knowledge. For this purpose we have (i) curated relevant MOP and CBU data; (ii) developed an assembly model concept that embeds rules in the MOP construction; (iii) developed an OntoMOPs ontology that defines MOPs and their key properties; (iv) input agents that populate The World Avatar (TWA) knowledge graph; and (v) input agents that, using information from TWA, derive a list of new constructible MOPs. Our result provides rapid and automated instantiation of MOPs in TWA and unveils the immediate chemical space of known MOPs, thus shedding light on new MOP targets for future investigations. American Chemical Society 2022-06-22 2022-07-06 /pmc/articles/PMC9264355/ /pubmed/35731954 http://dx.doi.org/10.1021/jacs.2c03402 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Kondinski, Aleksandar Menon, Angiras Nurkowski, Daniel Farazi, Feroz Mosbach, Sebastian Akroyd, Jethro Kraft, Markus Automated Rational Design of Metal–Organic Polyhedra |
title | Automated
Rational Design of Metal–Organic
Polyhedra |
title_full | Automated
Rational Design of Metal–Organic
Polyhedra |
title_fullStr | Automated
Rational Design of Metal–Organic
Polyhedra |
title_full_unstemmed | Automated
Rational Design of Metal–Organic
Polyhedra |
title_short | Automated
Rational Design of Metal–Organic
Polyhedra |
title_sort | automated
rational design of metal–organic
polyhedra |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9264355/ https://www.ncbi.nlm.nih.gov/pubmed/35731954 http://dx.doi.org/10.1021/jacs.2c03402 |
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