Cargando…

Automated Rational Design of Metal–Organic Polyhedra

[Image: see text] Metal–organic polyhedra (MOPs) are hybrid organic–inorganic nanomolecules, whose rational design depends on harmonious consideration of chemical complementarity and spatial compatibility between two or more types of chemical building units (CBUs). In this work, we apply knowledge e...

Descripción completa

Detalles Bibliográficos
Autores principales: Kondinski, Aleksandar, Menon, Angiras, Nurkowski, Daniel, Farazi, Feroz, Mosbach, Sebastian, Akroyd, Jethro, Kraft, Markus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9264355/
https://www.ncbi.nlm.nih.gov/pubmed/35731954
http://dx.doi.org/10.1021/jacs.2c03402
_version_ 1784742959318564864
author Kondinski, Aleksandar
Menon, Angiras
Nurkowski, Daniel
Farazi, Feroz
Mosbach, Sebastian
Akroyd, Jethro
Kraft, Markus
author_facet Kondinski, Aleksandar
Menon, Angiras
Nurkowski, Daniel
Farazi, Feroz
Mosbach, Sebastian
Akroyd, Jethro
Kraft, Markus
author_sort Kondinski, Aleksandar
collection PubMed
description [Image: see text] Metal–organic polyhedra (MOPs) are hybrid organic–inorganic nanomolecules, whose rational design depends on harmonious consideration of chemical complementarity and spatial compatibility between two or more types of chemical building units (CBUs). In this work, we apply knowledge engineering technology to automate the derivation of MOP formulations based on existing knowledge. For this purpose we have (i) curated relevant MOP and CBU data; (ii) developed an assembly model concept that embeds rules in the MOP construction; (iii) developed an OntoMOPs ontology that defines MOPs and their key properties; (iv) input agents that populate The World Avatar (TWA) knowledge graph; and (v) input agents that, using information from TWA, derive a list of new constructible MOPs. Our result provides rapid and automated instantiation of MOPs in TWA and unveils the immediate chemical space of known MOPs, thus shedding light on new MOP targets for future investigations.
format Online
Article
Text
id pubmed-9264355
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-92643552022-07-09 Automated Rational Design of Metal–Organic Polyhedra Kondinski, Aleksandar Menon, Angiras Nurkowski, Daniel Farazi, Feroz Mosbach, Sebastian Akroyd, Jethro Kraft, Markus J Am Chem Soc [Image: see text] Metal–organic polyhedra (MOPs) are hybrid organic–inorganic nanomolecules, whose rational design depends on harmonious consideration of chemical complementarity and spatial compatibility between two or more types of chemical building units (CBUs). In this work, we apply knowledge engineering technology to automate the derivation of MOP formulations based on existing knowledge. For this purpose we have (i) curated relevant MOP and CBU data; (ii) developed an assembly model concept that embeds rules in the MOP construction; (iii) developed an OntoMOPs ontology that defines MOPs and their key properties; (iv) input agents that populate The World Avatar (TWA) knowledge graph; and (v) input agents that, using information from TWA, derive a list of new constructible MOPs. Our result provides rapid and automated instantiation of MOPs in TWA and unveils the immediate chemical space of known MOPs, thus shedding light on new MOP targets for future investigations. American Chemical Society 2022-06-22 2022-07-06 /pmc/articles/PMC9264355/ /pubmed/35731954 http://dx.doi.org/10.1021/jacs.2c03402 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Kondinski, Aleksandar
Menon, Angiras
Nurkowski, Daniel
Farazi, Feroz
Mosbach, Sebastian
Akroyd, Jethro
Kraft, Markus
Automated Rational Design of Metal–Organic Polyhedra
title Automated Rational Design of Metal–Organic Polyhedra
title_full Automated Rational Design of Metal–Organic Polyhedra
title_fullStr Automated Rational Design of Metal–Organic Polyhedra
title_full_unstemmed Automated Rational Design of Metal–Organic Polyhedra
title_short Automated Rational Design of Metal–Organic Polyhedra
title_sort automated rational design of metal–organic polyhedra
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9264355/
https://www.ncbi.nlm.nih.gov/pubmed/35731954
http://dx.doi.org/10.1021/jacs.2c03402
work_keys_str_mv AT kondinskialeksandar automatedrationaldesignofmetalorganicpolyhedra
AT menonangiras automatedrationaldesignofmetalorganicpolyhedra
AT nurkowskidaniel automatedrationaldesignofmetalorganicpolyhedra
AT faraziferoz automatedrationaldesignofmetalorganicpolyhedra
AT mosbachsebastian automatedrationaldesignofmetalorganicpolyhedra
AT akroydjethro automatedrationaldesignofmetalorganicpolyhedra
AT kraftmarkus automatedrationaldesignofmetalorganicpolyhedra