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Viral Eco-Genomic Tools: Development and Implementation for Aquatic Biomonitoring

Enteric viruses (EVs) occurrence within aquatic environments varies and leads to significant risk on public health of humans, animals, and diversity of aquatic taxa. Early and efficacious recognition of cultivable and fastidious EVs in aquatic systems are important to ensure the sanitary level of aq...

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Autores principales: Mostafa-Hedeab, Gomaa, Allayeh, Abdou Kamal, Elhady, Hany Abdelfattah, Eledrdery, Abozer Y., Mraheil, Mobarak Abu, Mostafa, Ahmed
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9265447/
https://www.ncbi.nlm.nih.gov/pubmed/35805367
http://dx.doi.org/10.3390/ijerph19137707
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author Mostafa-Hedeab, Gomaa
Allayeh, Abdou Kamal
Elhady, Hany Abdelfattah
Eledrdery, Abozer Y.
Mraheil, Mobarak Abu
Mostafa, Ahmed
author_facet Mostafa-Hedeab, Gomaa
Allayeh, Abdou Kamal
Elhady, Hany Abdelfattah
Eledrdery, Abozer Y.
Mraheil, Mobarak Abu
Mostafa, Ahmed
author_sort Mostafa-Hedeab, Gomaa
collection PubMed
description Enteric viruses (EVs) occurrence within aquatic environments varies and leads to significant risk on public health of humans, animals, and diversity of aquatic taxa. Early and efficacious recognition of cultivable and fastidious EVs in aquatic systems are important to ensure the sanitary level of aquatic water and implement required treatment strategies. Herein, we provided a comprehensive overview of the conventional and up-to-date eco-genomic tools for aquatic biomonitoring of EVs, aiming to develop better water pollution monitoring tools. In combination with bioinformatics techniques, genetic tools including cloning sequencing analysis, DNA microarray, next-generation sequencing (NGS), and metagenomic sequencing technologies are implemented to make informed decisions about the global burden of waterborne EVs-associated diseases. The data presented in this review are helpful to recommend that: (1) Each viral pollution detection method has its own merits and demerits; therefore, it would be advantageous for viral pollution evaluation to be integrated as a complementary platform. (2) The total viral genome pool extracted from aquatic environmental samples is a real reflection of pollution status of the aquatic eco-systems; therefore, it is recommended to conduct regular sampling through the year to establish an updated monitoring system for EVs, and quantify viral peak concentrations, viral typing, and genotyping. (3) Despite that conventional detection methods are cheaper, it is highly recommended to implement molecular-based technologies to complement aquatic ecosystems biomonitoring due to numerous advantages including high-throughput capability. (4) Continuous implementation of the eco-genetic detection tools for monitoring the EVs in aquatic ecosystems is recommended.
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spelling pubmed-92654472022-07-09 Viral Eco-Genomic Tools: Development and Implementation for Aquatic Biomonitoring Mostafa-Hedeab, Gomaa Allayeh, Abdou Kamal Elhady, Hany Abdelfattah Eledrdery, Abozer Y. Mraheil, Mobarak Abu Mostafa, Ahmed Int J Environ Res Public Health Review Enteric viruses (EVs) occurrence within aquatic environments varies and leads to significant risk on public health of humans, animals, and diversity of aquatic taxa. Early and efficacious recognition of cultivable and fastidious EVs in aquatic systems are important to ensure the sanitary level of aquatic water and implement required treatment strategies. Herein, we provided a comprehensive overview of the conventional and up-to-date eco-genomic tools for aquatic biomonitoring of EVs, aiming to develop better water pollution monitoring tools. In combination with bioinformatics techniques, genetic tools including cloning sequencing analysis, DNA microarray, next-generation sequencing (NGS), and metagenomic sequencing technologies are implemented to make informed decisions about the global burden of waterborne EVs-associated diseases. The data presented in this review are helpful to recommend that: (1) Each viral pollution detection method has its own merits and demerits; therefore, it would be advantageous for viral pollution evaluation to be integrated as a complementary platform. (2) The total viral genome pool extracted from aquatic environmental samples is a real reflection of pollution status of the aquatic eco-systems; therefore, it is recommended to conduct regular sampling through the year to establish an updated monitoring system for EVs, and quantify viral peak concentrations, viral typing, and genotyping. (3) Despite that conventional detection methods are cheaper, it is highly recommended to implement molecular-based technologies to complement aquatic ecosystems biomonitoring due to numerous advantages including high-throughput capability. (4) Continuous implementation of the eco-genetic detection tools for monitoring the EVs in aquatic ecosystems is recommended. MDPI 2022-06-23 /pmc/articles/PMC9265447/ /pubmed/35805367 http://dx.doi.org/10.3390/ijerph19137707 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Mostafa-Hedeab, Gomaa
Allayeh, Abdou Kamal
Elhady, Hany Abdelfattah
Eledrdery, Abozer Y.
Mraheil, Mobarak Abu
Mostafa, Ahmed
Viral Eco-Genomic Tools: Development and Implementation for Aquatic Biomonitoring
title Viral Eco-Genomic Tools: Development and Implementation for Aquatic Biomonitoring
title_full Viral Eco-Genomic Tools: Development and Implementation for Aquatic Biomonitoring
title_fullStr Viral Eco-Genomic Tools: Development and Implementation for Aquatic Biomonitoring
title_full_unstemmed Viral Eco-Genomic Tools: Development and Implementation for Aquatic Biomonitoring
title_short Viral Eco-Genomic Tools: Development and Implementation for Aquatic Biomonitoring
title_sort viral eco-genomic tools: development and implementation for aquatic biomonitoring
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9265447/
https://www.ncbi.nlm.nih.gov/pubmed/35805367
http://dx.doi.org/10.3390/ijerph19137707
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