Cargando…

Fast Quantum Approach for Evaluating the Energy of Non-Covalent Interactions in Molecular Crystals: The Case Study of Intermolecular H-Bonds in Crystalline Peroxosolvates

Energy/enthalpy of intermolecular hydrogen bonds (H-bonds) in crystals have been calculated in many papers. Most of the theoretical works used non-periodic models. Their applicability for describing intermolecular H-bonds in solids is not obvious since the crystal environment can strongly change H-b...

Descripción completa

Detalles Bibliográficos
Autores principales: Medvedev, Alexander G., Churakov, Andrei V., Navasardyan, Mger A., Prikhodchenko, Petr V., Lev, Ovadia, Vener, Mikhail V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9268483/
https://www.ncbi.nlm.nih.gov/pubmed/35807323
http://dx.doi.org/10.3390/molecules27134082
_version_ 1784743994511589376
author Medvedev, Alexander G.
Churakov, Andrei V.
Navasardyan, Mger A.
Prikhodchenko, Petr V.
Lev, Ovadia
Vener, Mikhail V.
author_facet Medvedev, Alexander G.
Churakov, Andrei V.
Navasardyan, Mger A.
Prikhodchenko, Petr V.
Lev, Ovadia
Vener, Mikhail V.
author_sort Medvedev, Alexander G.
collection PubMed
description Energy/enthalpy of intermolecular hydrogen bonds (H-bonds) in crystals have been calculated in many papers. Most of the theoretical works used non-periodic models. Their applicability for describing intermolecular H-bonds in solids is not obvious since the crystal environment can strongly change H-bond geometry and energy in comparison with non-periodic models. Periodic DFT computations provide a reasonable description of a number of relevant properties of molecular crystals. However, these methods are quite cumbersome and time-consuming compared to non-periodic calculations. Here, we present a fast quantum approach for estimating the energy/enthalpy of intermolecular H-bonds in crystals. It has been tested on a family of crystalline peroxosolvates in which the H∙∙∙O bond set fills evenly (i.e., without significant gaps) the range of H∙∙∙O distances from ~1.5 to ~2.1 Å typical for strong, moderate, and weak H-bonds. Four of these two-component crystals (peroxosolvates of macrocyclic ethers and creatine) were obtained and structurally characterized for the first time. A critical comparison of the approaches for estimating the energy of intermolecular H-bonds in organic crystals is carried out, and various sources of errors are clarified.
format Online
Article
Text
id pubmed-9268483
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-92684832022-07-09 Fast Quantum Approach for Evaluating the Energy of Non-Covalent Interactions in Molecular Crystals: The Case Study of Intermolecular H-Bonds in Crystalline Peroxosolvates Medvedev, Alexander G. Churakov, Andrei V. Navasardyan, Mger A. Prikhodchenko, Petr V. Lev, Ovadia Vener, Mikhail V. Molecules Article Energy/enthalpy of intermolecular hydrogen bonds (H-bonds) in crystals have been calculated in many papers. Most of the theoretical works used non-periodic models. Their applicability for describing intermolecular H-bonds in solids is not obvious since the crystal environment can strongly change H-bond geometry and energy in comparison with non-periodic models. Periodic DFT computations provide a reasonable description of a number of relevant properties of molecular crystals. However, these methods are quite cumbersome and time-consuming compared to non-periodic calculations. Here, we present a fast quantum approach for estimating the energy/enthalpy of intermolecular H-bonds in crystals. It has been tested on a family of crystalline peroxosolvates in which the H∙∙∙O bond set fills evenly (i.e., without significant gaps) the range of H∙∙∙O distances from ~1.5 to ~2.1 Å typical for strong, moderate, and weak H-bonds. Four of these two-component crystals (peroxosolvates of macrocyclic ethers and creatine) were obtained and structurally characterized for the first time. A critical comparison of the approaches for estimating the energy of intermolecular H-bonds in organic crystals is carried out, and various sources of errors are clarified. MDPI 2022-06-24 /pmc/articles/PMC9268483/ /pubmed/35807323 http://dx.doi.org/10.3390/molecules27134082 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Medvedev, Alexander G.
Churakov, Andrei V.
Navasardyan, Mger A.
Prikhodchenko, Petr V.
Lev, Ovadia
Vener, Mikhail V.
Fast Quantum Approach for Evaluating the Energy of Non-Covalent Interactions in Molecular Crystals: The Case Study of Intermolecular H-Bonds in Crystalline Peroxosolvates
title Fast Quantum Approach for Evaluating the Energy of Non-Covalent Interactions in Molecular Crystals: The Case Study of Intermolecular H-Bonds in Crystalline Peroxosolvates
title_full Fast Quantum Approach for Evaluating the Energy of Non-Covalent Interactions in Molecular Crystals: The Case Study of Intermolecular H-Bonds in Crystalline Peroxosolvates
title_fullStr Fast Quantum Approach for Evaluating the Energy of Non-Covalent Interactions in Molecular Crystals: The Case Study of Intermolecular H-Bonds in Crystalline Peroxosolvates
title_full_unstemmed Fast Quantum Approach for Evaluating the Energy of Non-Covalent Interactions in Molecular Crystals: The Case Study of Intermolecular H-Bonds in Crystalline Peroxosolvates
title_short Fast Quantum Approach for Evaluating the Energy of Non-Covalent Interactions in Molecular Crystals: The Case Study of Intermolecular H-Bonds in Crystalline Peroxosolvates
title_sort fast quantum approach for evaluating the energy of non-covalent interactions in molecular crystals: the case study of intermolecular h-bonds in crystalline peroxosolvates
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9268483/
https://www.ncbi.nlm.nih.gov/pubmed/35807323
http://dx.doi.org/10.3390/molecules27134082
work_keys_str_mv AT medvedevalexanderg fastquantumapproachforevaluatingtheenergyofnoncovalentinteractionsinmolecularcrystalsthecasestudyofintermolecularhbondsincrystallineperoxosolvates
AT churakovandreiv fastquantumapproachforevaluatingtheenergyofnoncovalentinteractionsinmolecularcrystalsthecasestudyofintermolecularhbondsincrystallineperoxosolvates
AT navasardyanmgera fastquantumapproachforevaluatingtheenergyofnoncovalentinteractionsinmolecularcrystalsthecasestudyofintermolecularhbondsincrystallineperoxosolvates
AT prikhodchenkopetrv fastquantumapproachforevaluatingtheenergyofnoncovalentinteractionsinmolecularcrystalsthecasestudyofintermolecularhbondsincrystallineperoxosolvates
AT levovadia fastquantumapproachforevaluatingtheenergyofnoncovalentinteractionsinmolecularcrystalsthecasestudyofintermolecularhbondsincrystallineperoxosolvates
AT venermikhailv fastquantumapproachforevaluatingtheenergyofnoncovalentinteractionsinmolecularcrystalsthecasestudyofintermolecularhbondsincrystallineperoxosolvates