Cargando…

Machine Learning Assisted Handheld Confocal Raman Micro-Spectroscopy for Identification of Clinically Relevant Atopic Eczema Biomarkers

Atopic dermatitis (AD) is a common chronic inflammatory skin dermatosis condition due to skin barrier dysfunction that causes itchy, red, swollen, and cracked skin. Currently, AD severity clinical scores are subjected to intra- and inter-observer differences. There is a need for an objective scoring...

Descripción completa

Detalles Bibliográficos
Autores principales: Dev, Kapil, Ho, Chris Jun Hui, Bi, Renzhe, Yew, Yik Weng, S, Dinish U., Attia, Amalina Binte Ebrahim, Moothanchery, Mohesh, Guan, Steven Thng Tien, Olivo, Malini
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9269422/
https://www.ncbi.nlm.nih.gov/pubmed/35808168
http://dx.doi.org/10.3390/s22134674
_version_ 1784744232710307840
author Dev, Kapil
Ho, Chris Jun Hui
Bi, Renzhe
Yew, Yik Weng
S, Dinish U.
Attia, Amalina Binte Ebrahim
Moothanchery, Mohesh
Guan, Steven Thng Tien
Olivo, Malini
author_facet Dev, Kapil
Ho, Chris Jun Hui
Bi, Renzhe
Yew, Yik Weng
S, Dinish U.
Attia, Amalina Binte Ebrahim
Moothanchery, Mohesh
Guan, Steven Thng Tien
Olivo, Malini
author_sort Dev, Kapil
collection PubMed
description Atopic dermatitis (AD) is a common chronic inflammatory skin dermatosis condition due to skin barrier dysfunction that causes itchy, red, swollen, and cracked skin. Currently, AD severity clinical scores are subjected to intra- and inter-observer differences. There is a need for an objective scoring method that is sensitive to skin barrier differences. The aim of this study was to evaluate the relevant skin chemical biomarkers in AD patients. We used confocal Raman micro-spectroscopy and advanced machine learning methods as means to classify eczema patients and healthy controls with sufficient sensitivity and specificity. Raman spectra at different skin depths were acquired from subjects’ lower volar forearm location using an in-house developed handheld confocal Raman micro-spectroscopy system. The Raman spectra corresponding to the skin surface from all the subjects were further analyzed through partial least squares discriminant analysis, a binary classification model allowing the classification between eczema and healthy subjects with a sensitivity and specificity of 0.94 and 0.85, respectively, using stratified K-fold (K = 10) cross-validation. The variable importance in the projection score from the partial least squares discriminant analysis classification model further elucidated the role of important stratum corneum proteins and lipids in distinguishing two subject groups.
format Online
Article
Text
id pubmed-9269422
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-92694222022-07-09 Machine Learning Assisted Handheld Confocal Raman Micro-Spectroscopy for Identification of Clinically Relevant Atopic Eczema Biomarkers Dev, Kapil Ho, Chris Jun Hui Bi, Renzhe Yew, Yik Weng S, Dinish U. Attia, Amalina Binte Ebrahim Moothanchery, Mohesh Guan, Steven Thng Tien Olivo, Malini Sensors (Basel) Article Atopic dermatitis (AD) is a common chronic inflammatory skin dermatosis condition due to skin barrier dysfunction that causes itchy, red, swollen, and cracked skin. Currently, AD severity clinical scores are subjected to intra- and inter-observer differences. There is a need for an objective scoring method that is sensitive to skin barrier differences. The aim of this study was to evaluate the relevant skin chemical biomarkers in AD patients. We used confocal Raman micro-spectroscopy and advanced machine learning methods as means to classify eczema patients and healthy controls with sufficient sensitivity and specificity. Raman spectra at different skin depths were acquired from subjects’ lower volar forearm location using an in-house developed handheld confocal Raman micro-spectroscopy system. The Raman spectra corresponding to the skin surface from all the subjects were further analyzed through partial least squares discriminant analysis, a binary classification model allowing the classification between eczema and healthy subjects with a sensitivity and specificity of 0.94 and 0.85, respectively, using stratified K-fold (K = 10) cross-validation. The variable importance in the projection score from the partial least squares discriminant analysis classification model further elucidated the role of important stratum corneum proteins and lipids in distinguishing two subject groups. MDPI 2022-06-21 /pmc/articles/PMC9269422/ /pubmed/35808168 http://dx.doi.org/10.3390/s22134674 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Dev, Kapil
Ho, Chris Jun Hui
Bi, Renzhe
Yew, Yik Weng
S, Dinish U.
Attia, Amalina Binte Ebrahim
Moothanchery, Mohesh
Guan, Steven Thng Tien
Olivo, Malini
Machine Learning Assisted Handheld Confocal Raman Micro-Spectroscopy for Identification of Clinically Relevant Atopic Eczema Biomarkers
title Machine Learning Assisted Handheld Confocal Raman Micro-Spectroscopy for Identification of Clinically Relevant Atopic Eczema Biomarkers
title_full Machine Learning Assisted Handheld Confocal Raman Micro-Spectroscopy for Identification of Clinically Relevant Atopic Eczema Biomarkers
title_fullStr Machine Learning Assisted Handheld Confocal Raman Micro-Spectroscopy for Identification of Clinically Relevant Atopic Eczema Biomarkers
title_full_unstemmed Machine Learning Assisted Handheld Confocal Raman Micro-Spectroscopy for Identification of Clinically Relevant Atopic Eczema Biomarkers
title_short Machine Learning Assisted Handheld Confocal Raman Micro-Spectroscopy for Identification of Clinically Relevant Atopic Eczema Biomarkers
title_sort machine learning assisted handheld confocal raman micro-spectroscopy for identification of clinically relevant atopic eczema biomarkers
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9269422/
https://www.ncbi.nlm.nih.gov/pubmed/35808168
http://dx.doi.org/10.3390/s22134674
work_keys_str_mv AT devkapil machinelearningassistedhandheldconfocalramanmicrospectroscopyforidentificationofclinicallyrelevantatopiceczemabiomarkers
AT hochrisjunhui machinelearningassistedhandheldconfocalramanmicrospectroscopyforidentificationofclinicallyrelevantatopiceczemabiomarkers
AT birenzhe machinelearningassistedhandheldconfocalramanmicrospectroscopyforidentificationofclinicallyrelevantatopiceczemabiomarkers
AT yewyikweng machinelearningassistedhandheldconfocalramanmicrospectroscopyforidentificationofclinicallyrelevantatopiceczemabiomarkers
AT sdinishu machinelearningassistedhandheldconfocalramanmicrospectroscopyforidentificationofclinicallyrelevantatopiceczemabiomarkers
AT attiaamalinabinteebrahim machinelearningassistedhandheldconfocalramanmicrospectroscopyforidentificationofclinicallyrelevantatopiceczemabiomarkers
AT moothancherymohesh machinelearningassistedhandheldconfocalramanmicrospectroscopyforidentificationofclinicallyrelevantatopiceczemabiomarkers
AT guansteventhngtien machinelearningassistedhandheldconfocalramanmicrospectroscopyforidentificationofclinicallyrelevantatopiceczemabiomarkers
AT olivomalini machinelearningassistedhandheldconfocalramanmicrospectroscopyforidentificationofclinicallyrelevantatopiceczemabiomarkers