Cargando…

Mimicked synthetic ribosomal protein complex for benchmarking crosslinking mass spectrometry workflows

Cross-linking mass spectrometry has matured to a frequently used tool for the investigation of protein structures as well as interactome studies up to a system-wide level. The growing community generated a broad spectrum of applications, linker types, acquisition strategies and specialized data anal...

Descripción completa

Detalles Bibliográficos
Autores principales:	Matzinger, Manuel, Vasiu, Adrian, Madalinski, Mathias, Müller, Fränze, Stanek, Florian, Mechtler, Karl
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2022
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9270371/ https://www.ncbi.nlm.nih.gov/pubmed/35803948 http://dx.doi.org/10.1038/s41467-022-31701-w

Ejemplares similares

A synthetic peptide library for benchmarking crosslinking-mass spectrometry search engines for proteins and protein complexes
por: Beveridge, Rebecca, et al.
Publicado: (2020)

MS Annika 2.0 Identifies Cross-Linked Peptides in MS2–MS3-Based Workflows at High Sensitivity and Specificity
por: Birklbauer, Micha J., et al.
Publicado: (2023)

Robust and Easy-to-Use One-Pot Workflow for Label-Free Single-Cell Proteomics
por: Matzinger, Manuel, et al.
Publicado: (2023)

An integrated workflow for crosslinking mass spectrometry
por: Mendes, Marta L, et al.
Publicado: (2019)

Cleavable Cross-Linkers and Mass Spectrometry for the Ultimate Task of Profiling Protein–Protein Interaction Networks in Vivo
por: Matzinger, Manuel, et al.
Publicado: (2020)

Quantitative Photo-crosslinking Mass Spectrometry Revealing Protein Structure Response to Environmental Changes
por: Müller, Fränze, et al.
Publicado: (2019)

Interpretation of anomalously long crosslinks in ribosome crosslinking reveals the ribosome interaction in stationary phase E. coli
por: Misal, Santosh A., et al.
Publicado: (2022)

Benchmarking cryo-EM Single Particle Analysis Workflow
por: Kim, Laura Y., et al.
Publicado: (2018)

Cerebellar Cells Self-Assemble into Functional Organoids on Synthetic, Chemically Crosslinked ECM-Mimicking Peptide Hydrogels
por: Balion, Zbigniev, et al.
Publicado: (2020)

AMPK leads to phosphorylation of the transcription factor Nrf2, tuning transactivation of selected target genes
por: Matzinger, Manuel, et al.
Publicado: (2019)

Fast and Highly Efficient Affinity Enrichment of Azide-A-DSBSO Cross-Linked Peptides
por: Matzinger, Manuel, et al.
Publicado: (2020)

RiboReport - benchmarking tools for ribosome profiling-based identification of open reading frames in bacteria
por: Gelhausen, Rick, et al.
Publicado: (2022)

Semantic workflows for benchmark challenges: Enhancing comparability, reusability and reproducibility
por: Srivastava, Arunima, et al.
Publicado: (2019)

A Modular Workflow for Performance Benchmarking of Neuronal Network Simulations
por: Albers, Jasper, et al.
Publicado: (2022)

Benchmarking the PEPOP methods for mimicking discontinuous epitopes
por: Demolombe, Vincent, et al.
Publicado: (2019)

Using HEP experiment workflows for the benchmarking and accounting of WLCG computing resources
por: Valassi, Andrea, et al.
Publicado: (2020)

Benchmarking UMI-based single-cell RNA-seq preprocessing workflows
por: You, Yue, et al.
Publicado: (2021)

Benchmarking the topological accuracy of bacterial phylogenomic workflows using in silico evolution
por: van der Putten, Boas C. L., et al.
Publicado: (2022)

Protein Tertiary Structure by Crosslinking/Mass Spectrometry
por: Schneider, Michael, et al.
Publicado: (2018)

Corrigendum: MuSK Kinase Activity is Modulated By A Serine Phosphorylation Site in The Kinase Loop
por: Camurdanoglu, B. Z., et al.
Publicado: (2016)

Musk Kinase Activity is Modulated By A Serine Phosphorylation Site in The Kinase Loop
por: Camurdanoglu, B. Z., et al.
Publicado: (2016)

MS Annika: A New Cross-Linking Search Engine
por: Pirklbauer, Georg J., et al.
Publicado: (2021)

BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows
por: Rubens, Ulysse, et al.
Publicado: (2020)

Benchmarking commonly used software suites and analysis workflows for DIA proteomics and phosphoproteomics
por: Lou, Ronghui, et al.
Publicado: (2023)

Protein Dynamics in Solution by Quantitative Crosslinking/Mass Spectrometry
por: Chen, Zhuo A., et al.
Publicado: (2018)

An automated proteomic data analysis workflow for mass spectrometry
por: Pendarvis, Ken, et al.
Publicado: (2009)

Automated workflow composition in mass spectrometry-based proteomics
por: Palmblad, Magnus, et al.
Publicado: (2019)

An efficient single-cell transcriptomics workflow for microbial eukaryotes benchmarked on Giardia intestinalis cells
por: Onsbring, Henning, et al.
Publicado: (2020)

Ribosome binding to the endoplasmic reticulum: a 180-kD protein identified by crosslinking to membrane-bound ribosomes is not required for ribosome binding activity
Publicado: (1991)

Deep Proteome Profiling with Reduced Carryover Using Superficially Porous Microfabricated nanoLC Columns
por: Stejskal, Karel, et al.
Publicado: (2022)

Reliable identification of protein-protein interactions by crosslinking mass spectrometry
por: Lenz, Swantje, et al.
Publicado: (2021)

Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry
por: Aiche, Stephan, et al.
Publicado: (2015)

On the Reproducibility of Label-Free Quantitative Cross-Linking/Mass Spectrometry
por: Müller, Fränze, et al.
Publicado: (2017)

Recent advancements in enzyme-mediated crosslinkable hydrogels: In vivo-mimicking strategies
por: Song, Wonmoon, et al.
Publicado: (2021)

Charged Lepton Flavour Violation benchmarks in FCCee
por: Stanek, Weronika
Publicado: (2022)

Physically crosslinked polyvinyl alcohol hydrogels as synthetic cartilage materials
por: Schweizer, S., et al.
Publicado: (2021)

An Automated Nanowell-Array Workflow for Quantitative Multiplexed Single-Cell Proteomics Sample Preparation at High Sensitivity
por: Ctortecka, Claudia, et al.
Publicado: (2023)

Benchmarking workflows to assess performance and suitability of germline variant calling pipelines in clinical diagnostic assays
por: Krishnan, Vandhana, et al.
Publicado: (2021)

Unleashing high content screening in hit detection – Benchmarking AI workflows including novelty detection
por: Kupczyk, Erwin, et al.
Publicado: (2022)

Mass Spectrometry-Based Glycoproteomic Workflows for Cancer Biomarker Discovery
por: Doud, Emma H., et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_h69tr3jgib223idlfqveh84ng7