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Prognostic Impact of the Angiogenic Gene POSTN and Its Related Genes on Lung Adenocarcinoma
BACKGROUND: The function of angiogenesis-related genes (ARGs) in lung adenocarcinoma (LUAD) remains poorly documented. This study was designed to reveal ARGs in LUAD and related networks. METHODS: We worked with sequencing data and clinical information pertaining to LUAD from public databases. ARGs...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9271775/ https://www.ncbi.nlm.nih.gov/pubmed/35832544 http://dx.doi.org/10.3389/fonc.2022.699824 |
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author | Sun, Dongfeng Gai, Zhibo Wu, Jie Chen, Qingfa |
author_facet | Sun, Dongfeng Gai, Zhibo Wu, Jie Chen, Qingfa |
author_sort | Sun, Dongfeng |
collection | PubMed |
description | BACKGROUND: The function of angiogenesis-related genes (ARGs) in lung adenocarcinoma (LUAD) remains poorly documented. This study was designed to reveal ARGs in LUAD and related networks. METHODS: We worked with sequencing data and clinical information pertaining to LUAD from public databases. ARGs were retrieved from the HALLMARK_ANGIOGENESIS gene set. Differential analysis and Kaplan–Meier (K–M) analysis were performed to authenticate the ARGs associated with LUAD. Weighted gene correlation network analysis was performed on the mining hub genes linked to the abovementioned genes, and functional enrichment analysis was done. Subsequently, Cox regression analyses were used to construct the prognostic gene. POSTN and microvessel density were detected using immunohistochemistry. RESULTS: POSTN, an ARG that was highly expressed in patients with LUAD and was closely associated with their weak overall survival was identified. Differentially expressed genes associated with POSTN were mainly enriched in entries related to the tubulointerstitial system, immune response, and epithelial cells. A positive correlation was demonstrated between POSTN expression and tumor microvessel density in LUAD. Subsequently, a prognostic gene signature was constructed and revealed that 4 genes may predict the survival of LUAD patients. Furthermore, the ESTIMATE and CIBERSORT analyses suggested that our risk scoring system may be implicated in altering the immune microenvironment of patients with LUAD. Finally, a ceRNA network was constructed based on the prognostic genes, and the regulatory networks were examined. CONCLUSION: POSTN, a novel prognostic gene signature associated with ARGs, was constructed for the prognosis of patients with LUAD. This signature may alter the immune microenvironment by modulating the activation of the tubulointerstitial system, epithelial cells, and immune cells, ultimately affecting patient survival. |
format | Online Article Text |
id | pubmed-9271775 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92717752022-07-12 Prognostic Impact of the Angiogenic Gene POSTN and Its Related Genes on Lung Adenocarcinoma Sun, Dongfeng Gai, Zhibo Wu, Jie Chen, Qingfa Front Oncol Oncology BACKGROUND: The function of angiogenesis-related genes (ARGs) in lung adenocarcinoma (LUAD) remains poorly documented. This study was designed to reveal ARGs in LUAD and related networks. METHODS: We worked with sequencing data and clinical information pertaining to LUAD from public databases. ARGs were retrieved from the HALLMARK_ANGIOGENESIS gene set. Differential analysis and Kaplan–Meier (K–M) analysis were performed to authenticate the ARGs associated with LUAD. Weighted gene correlation network analysis was performed on the mining hub genes linked to the abovementioned genes, and functional enrichment analysis was done. Subsequently, Cox regression analyses were used to construct the prognostic gene. POSTN and microvessel density were detected using immunohistochemistry. RESULTS: POSTN, an ARG that was highly expressed in patients with LUAD and was closely associated with their weak overall survival was identified. Differentially expressed genes associated with POSTN were mainly enriched in entries related to the tubulointerstitial system, immune response, and epithelial cells. A positive correlation was demonstrated between POSTN expression and tumor microvessel density in LUAD. Subsequently, a prognostic gene signature was constructed and revealed that 4 genes may predict the survival of LUAD patients. Furthermore, the ESTIMATE and CIBERSORT analyses suggested that our risk scoring system may be implicated in altering the immune microenvironment of patients with LUAD. Finally, a ceRNA network was constructed based on the prognostic genes, and the regulatory networks were examined. CONCLUSION: POSTN, a novel prognostic gene signature associated with ARGs, was constructed for the prognosis of patients with LUAD. This signature may alter the immune microenvironment by modulating the activation of the tubulointerstitial system, epithelial cells, and immune cells, ultimately affecting patient survival. Frontiers Media S.A. 2022-06-27 /pmc/articles/PMC9271775/ /pubmed/35832544 http://dx.doi.org/10.3389/fonc.2022.699824 Text en Copyright © 2022 Sun, Gai, Wu and Chen https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Sun, Dongfeng Gai, Zhibo Wu, Jie Chen, Qingfa Prognostic Impact of the Angiogenic Gene POSTN and Its Related Genes on Lung Adenocarcinoma |
title | Prognostic Impact of the Angiogenic Gene POSTN and Its Related Genes on Lung Adenocarcinoma |
title_full | Prognostic Impact of the Angiogenic Gene POSTN and Its Related Genes on Lung Adenocarcinoma |
title_fullStr | Prognostic Impact of the Angiogenic Gene POSTN and Its Related Genes on Lung Adenocarcinoma |
title_full_unstemmed | Prognostic Impact of the Angiogenic Gene POSTN and Its Related Genes on Lung Adenocarcinoma |
title_short | Prognostic Impact of the Angiogenic Gene POSTN and Its Related Genes on Lung Adenocarcinoma |
title_sort | prognostic impact of the angiogenic gene postn and its related genes on lung adenocarcinoma |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9271775/ https://www.ncbi.nlm.nih.gov/pubmed/35832544 http://dx.doi.org/10.3389/fonc.2022.699824 |
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