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Prediction of EGFR Mutation Status in Non–Small Cell Lung Cancer Based on Ensemble Learning

Objectives: We aimed to identify whether ensemble learning can improve the performance of the epidermal growth factor receptor (EGFR) mutation status predicting model. Methods: We retrospectively collected 168 patients with non–small cell lung cancer (NSCLC), who underwent both computed tomography (...

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Autores principales: Feng, Youdan, Song, Fan, Zhang, Peng, Fan, Guangda, Zhang, Tianyi, Zhao, Xiangyu, Ma, Chenbin, Sun, Yangyang, Song, Xiao, Pu, Huangsheng, Liu, Fei, Zhang, Guanglei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9271946/
https://www.ncbi.nlm.nih.gov/pubmed/35833032
http://dx.doi.org/10.3389/fphar.2022.897597
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author Feng, Youdan
Song, Fan
Zhang, Peng
Fan, Guangda
Zhang, Tianyi
Zhao, Xiangyu
Ma, Chenbin
Sun, Yangyang
Song, Xiao
Pu, Huangsheng
Liu, Fei
Zhang, Guanglei
author_facet Feng, Youdan
Song, Fan
Zhang, Peng
Fan, Guangda
Zhang, Tianyi
Zhao, Xiangyu
Ma, Chenbin
Sun, Yangyang
Song, Xiao
Pu, Huangsheng
Liu, Fei
Zhang, Guanglei
author_sort Feng, Youdan
collection PubMed
description Objectives: We aimed to identify whether ensemble learning can improve the performance of the epidermal growth factor receptor (EGFR) mutation status predicting model. Methods: We retrospectively collected 168 patients with non–small cell lung cancer (NSCLC), who underwent both computed tomography (CT) examination and EGFR test. Using the radiomics features extracted from the CT images, an ensemble model was established with four individual classifiers: logistic regression (LR), support vector machine (SVM), random forest (RF), and extreme gradient boosting (XGBoost). The synthetic minority oversampling technique (SMOTE) was also used to decrease the influence of data imbalance. The performances of the predicting model were evaluated using the area under the curve (AUC). Results: Based on the 26 radiomics features after feature selection, the SVM performed best (AUCs of 0.8634 and 0.7885 on the training and test sets, respectively) among four individual classifiers. The ensemble model of RF, XGBoost, and LR achieved the best performance (AUCs of 0.8465 and 0.8654 on the training and test sets, respectively). Conclusion: Ensemble learning can improve the model performance in predicting the EGFR mutation status of patients with NSCLC, showing potential value in clinical practice.
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spelling pubmed-92719462022-07-12 Prediction of EGFR Mutation Status in Non–Small Cell Lung Cancer Based on Ensemble Learning Feng, Youdan Song, Fan Zhang, Peng Fan, Guangda Zhang, Tianyi Zhao, Xiangyu Ma, Chenbin Sun, Yangyang Song, Xiao Pu, Huangsheng Liu, Fei Zhang, Guanglei Front Pharmacol Pharmacology Objectives: We aimed to identify whether ensemble learning can improve the performance of the epidermal growth factor receptor (EGFR) mutation status predicting model. Methods: We retrospectively collected 168 patients with non–small cell lung cancer (NSCLC), who underwent both computed tomography (CT) examination and EGFR test. Using the radiomics features extracted from the CT images, an ensemble model was established with four individual classifiers: logistic regression (LR), support vector machine (SVM), random forest (RF), and extreme gradient boosting (XGBoost). The synthetic minority oversampling technique (SMOTE) was also used to decrease the influence of data imbalance. The performances of the predicting model were evaluated using the area under the curve (AUC). Results: Based on the 26 radiomics features after feature selection, the SVM performed best (AUCs of 0.8634 and 0.7885 on the training and test sets, respectively) among four individual classifiers. The ensemble model of RF, XGBoost, and LR achieved the best performance (AUCs of 0.8465 and 0.8654 on the training and test sets, respectively). Conclusion: Ensemble learning can improve the model performance in predicting the EGFR mutation status of patients with NSCLC, showing potential value in clinical practice. Frontiers Media S.A. 2022-06-27 /pmc/articles/PMC9271946/ /pubmed/35833032 http://dx.doi.org/10.3389/fphar.2022.897597 Text en Copyright © 2022 Feng, Song, Zhang, Fan, Zhang, Zhao, Ma, Sun, Song, Pu, Liu and Zhang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Pharmacology
Feng, Youdan
Song, Fan
Zhang, Peng
Fan, Guangda
Zhang, Tianyi
Zhao, Xiangyu
Ma, Chenbin
Sun, Yangyang
Song, Xiao
Pu, Huangsheng
Liu, Fei
Zhang, Guanglei
Prediction of EGFR Mutation Status in Non–Small Cell Lung Cancer Based on Ensemble Learning
title Prediction of EGFR Mutation Status in Non–Small Cell Lung Cancer Based on Ensemble Learning
title_full Prediction of EGFR Mutation Status in Non–Small Cell Lung Cancer Based on Ensemble Learning
title_fullStr Prediction of EGFR Mutation Status in Non–Small Cell Lung Cancer Based on Ensemble Learning
title_full_unstemmed Prediction of EGFR Mutation Status in Non–Small Cell Lung Cancer Based on Ensemble Learning
title_short Prediction of EGFR Mutation Status in Non–Small Cell Lung Cancer Based on Ensemble Learning
title_sort prediction of egfr mutation status in non–small cell lung cancer based on ensemble learning
topic Pharmacology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9271946/
https://www.ncbi.nlm.nih.gov/pubmed/35833032
http://dx.doi.org/10.3389/fphar.2022.897597
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