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Macrophages and monocytes mediated activation of oxidative phosphorylation implicated the prognosis and clinical therapeutic strategy of Wilms tumour

Wilms tumour is the fourth leading cause of paediatric malignancy, but the detailed relationship between the tumour microenvironment and prognosis remains largely unclear. In this research, gene expression profile and clinical information from TARGET and the First Affiliated Hospital of Anhui Medica...

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Autores principales: Meng, Jialin, Chen, Yonghao, Lu, Xiaofan, Ge, Qintao, Yang, Feixiang, Bai, Suwen, Liang, Chaozhao, Du, Juan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9271979/
https://www.ncbi.nlm.nih.gov/pubmed/35832632
http://dx.doi.org/10.1016/j.csbj.2022.06.052
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author Meng, Jialin
Chen, Yonghao
Lu, Xiaofan
Ge, Qintao
Yang, Feixiang
Bai, Suwen
Liang, Chaozhao
Du, Juan
author_facet Meng, Jialin
Chen, Yonghao
Lu, Xiaofan
Ge, Qintao
Yang, Feixiang
Bai, Suwen
Liang, Chaozhao
Du, Juan
author_sort Meng, Jialin
collection PubMed
description Wilms tumour is the fourth leading cause of paediatric malignancy, but the detailed relationship between the tumour microenvironment and prognosis remains largely unclear. In this research, gene expression profile and clinical information from TARGET and the First Affiliated Hospital of Anhui Medical University were collected. After comparing the prognostic value of the associated immune cells, we established a nomogram to predict the prognosis of Wilms tumour based on monocyte infiltration, macrophage infiltration, stage, and sex. Further results showed that the most significant relationship between matrix metallopeptidase 9 and prognosis or macrophage infiltration. Meanwhile, by gene set enrichment or variation analyses and immunohistochemistry staining, we demonstrated that the most highly enriched hub genes were closely related to the activated oxidative phosphorylation pathway. Finally, through tumour immune dysfunction and an exclusion algorithm, the satisfactory discriminative performance of our nomogram was revealed for predicting the response to clinical therapy. Anti-PD1 therapy is more suitable for Wilms tumour patients with high nomogram points, and chemotherapies are more effective for patients with low nomogram score.
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spelling pubmed-92719792022-07-12 Macrophages and monocytes mediated activation of oxidative phosphorylation implicated the prognosis and clinical therapeutic strategy of Wilms tumour Meng, Jialin Chen, Yonghao Lu, Xiaofan Ge, Qintao Yang, Feixiang Bai, Suwen Liang, Chaozhao Du, Juan Comput Struct Biotechnol J Research Article Wilms tumour is the fourth leading cause of paediatric malignancy, but the detailed relationship between the tumour microenvironment and prognosis remains largely unclear. In this research, gene expression profile and clinical information from TARGET and the First Affiliated Hospital of Anhui Medical University were collected. After comparing the prognostic value of the associated immune cells, we established a nomogram to predict the prognosis of Wilms tumour based on monocyte infiltration, macrophage infiltration, stage, and sex. Further results showed that the most significant relationship between matrix metallopeptidase 9 and prognosis or macrophage infiltration. Meanwhile, by gene set enrichment or variation analyses and immunohistochemistry staining, we demonstrated that the most highly enriched hub genes were closely related to the activated oxidative phosphorylation pathway. Finally, through tumour immune dysfunction and an exclusion algorithm, the satisfactory discriminative performance of our nomogram was revealed for predicting the response to clinical therapy. Anti-PD1 therapy is more suitable for Wilms tumour patients with high nomogram points, and chemotherapies are more effective for patients with low nomogram score. Research Network of Computational and Structural Biotechnology 2022-06-27 /pmc/articles/PMC9271979/ /pubmed/35832632 http://dx.doi.org/10.1016/j.csbj.2022.06.052 Text en © 2022 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Meng, Jialin
Chen, Yonghao
Lu, Xiaofan
Ge, Qintao
Yang, Feixiang
Bai, Suwen
Liang, Chaozhao
Du, Juan
Macrophages and monocytes mediated activation of oxidative phosphorylation implicated the prognosis and clinical therapeutic strategy of Wilms tumour
title Macrophages and monocytes mediated activation of oxidative phosphorylation implicated the prognosis and clinical therapeutic strategy of Wilms tumour
title_full Macrophages and monocytes mediated activation of oxidative phosphorylation implicated the prognosis and clinical therapeutic strategy of Wilms tumour
title_fullStr Macrophages and monocytes mediated activation of oxidative phosphorylation implicated the prognosis and clinical therapeutic strategy of Wilms tumour
title_full_unstemmed Macrophages and monocytes mediated activation of oxidative phosphorylation implicated the prognosis and clinical therapeutic strategy of Wilms tumour
title_short Macrophages and monocytes mediated activation of oxidative phosphorylation implicated the prognosis and clinical therapeutic strategy of Wilms tumour
title_sort macrophages and monocytes mediated activation of oxidative phosphorylation implicated the prognosis and clinical therapeutic strategy of wilms tumour
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9271979/
https://www.ncbi.nlm.nih.gov/pubmed/35832632
http://dx.doi.org/10.1016/j.csbj.2022.06.052
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