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Amide Spectral Fingerprints are Hydrogen Bonding-Mediated

[Image: see text] The origin of the peculiar amide spectral features of proteins in aqueous solution is investigated, by exploiting a combined theoretical and experimental approach to study UV Resonance Raman (RR) spectra of peptide molecular models, namely N-acetylglycine-N-methylamide (NAGMA) and...

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Autores principales: Gómez, Sara, Bottari, Cettina, Egidi, Franco, Giovannini, Tommaso, Rossi, Barbara, Cappelli, Chiara
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9272440/
https://www.ncbi.nlm.nih.gov/pubmed/35770492
http://dx.doi.org/10.1021/acs.jpclett.2c01277
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author Gómez, Sara
Bottari, Cettina
Egidi, Franco
Giovannini, Tommaso
Rossi, Barbara
Cappelli, Chiara
author_facet Gómez, Sara
Bottari, Cettina
Egidi, Franco
Giovannini, Tommaso
Rossi, Barbara
Cappelli, Chiara
author_sort Gómez, Sara
collection PubMed
description [Image: see text] The origin of the peculiar amide spectral features of proteins in aqueous solution is investigated, by exploiting a combined theoretical and experimental approach to study UV Resonance Raman (RR) spectra of peptide molecular models, namely N-acetylglycine-N-methylamide (NAGMA) and N-acetylalanine-N-methylamide (NALMA). UVRR spectra are recorded by tuning Synchrotron Radiation at several excitation wavelengths and modeled by using a recently developed multiscale protocol based on a polarizable QM/MM approach. Thanks to the unparalleled agreement between theory and experiment, we demonstrate that specific hydrogen bond interactions, which dominate hydration dynamics around these solutes, play a crucial role in the selective enhancement of amide signals. These results further argue the capability of vibrational spectroscopy methods as valuable tools for refined structural analysis of peptides and proteins in aqueous solution.
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spelling pubmed-92724402022-07-12 Amide Spectral Fingerprints are Hydrogen Bonding-Mediated Gómez, Sara Bottari, Cettina Egidi, Franco Giovannini, Tommaso Rossi, Barbara Cappelli, Chiara J Phys Chem Lett [Image: see text] The origin of the peculiar amide spectral features of proteins in aqueous solution is investigated, by exploiting a combined theoretical and experimental approach to study UV Resonance Raman (RR) spectra of peptide molecular models, namely N-acetylglycine-N-methylamide (NAGMA) and N-acetylalanine-N-methylamide (NALMA). UVRR spectra are recorded by tuning Synchrotron Radiation at several excitation wavelengths and modeled by using a recently developed multiscale protocol based on a polarizable QM/MM approach. Thanks to the unparalleled agreement between theory and experiment, we demonstrate that specific hydrogen bond interactions, which dominate hydration dynamics around these solutes, play a crucial role in the selective enhancement of amide signals. These results further argue the capability of vibrational spectroscopy methods as valuable tools for refined structural analysis of peptides and proteins in aqueous solution. American Chemical Society 2022-06-30 2022-07-07 /pmc/articles/PMC9272440/ /pubmed/35770492 http://dx.doi.org/10.1021/acs.jpclett.2c01277 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Gómez, Sara
Bottari, Cettina
Egidi, Franco
Giovannini, Tommaso
Rossi, Barbara
Cappelli, Chiara
Amide Spectral Fingerprints are Hydrogen Bonding-Mediated
title Amide Spectral Fingerprints are Hydrogen Bonding-Mediated
title_full Amide Spectral Fingerprints are Hydrogen Bonding-Mediated
title_fullStr Amide Spectral Fingerprints are Hydrogen Bonding-Mediated
title_full_unstemmed Amide Spectral Fingerprints are Hydrogen Bonding-Mediated
title_short Amide Spectral Fingerprints are Hydrogen Bonding-Mediated
title_sort amide spectral fingerprints are hydrogen bonding-mediated
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9272440/
https://www.ncbi.nlm.nih.gov/pubmed/35770492
http://dx.doi.org/10.1021/acs.jpclett.2c01277
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