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Ct values as a diagnostic tool for monitoring SARS-CoV-2 viral load using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel
OBJECTIVES: Qualitative real-time polymerase chain reaction tests are not designed to provide quantitative or semiquantitative results because cycle threshold (Ct) values are not normalized to standardized controls of known concentration. The aim of this study was to characterize SARS-CoV-2 viral lo...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Authors. Published by Elsevier Ltd on behalf of International Society for Infectious Diseases.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9273520/ https://www.ncbi.nlm.nih.gov/pubmed/35840097 http://dx.doi.org/10.1016/j.ijid.2022.07.022 |
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author | Juanola-Falgarona, Martí Peñarrubia, Luis Jiménez-Guzmán, Sara Porco, Roberto Congost-Teixidor, Clàudia Varo-Velázquez, Marta Rao, Sonia N Pueyo, Gemma Manissero, Davide Pareja, Josep |
author_facet | Juanola-Falgarona, Martí Peñarrubia, Luis Jiménez-Guzmán, Sara Porco, Roberto Congost-Teixidor, Clàudia Varo-Velázquez, Marta Rao, Sonia N Pueyo, Gemma Manissero, Davide Pareja, Josep |
author_sort | Juanola-Falgarona, Martí |
collection | PubMed |
description | OBJECTIVES: Qualitative real-time polymerase chain reaction tests are not designed to provide quantitative or semiquantitative results because cycle threshold (Ct) values are not normalized to standardized controls of known concentration. The aim of this study was to characterize SARS-CoV-2 viral loads based on Ct values, using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel. METHODS: Different lineages of SARS-CoV-2 clinical samples and the World Health Organization international standard were used to assess the linearity of the QIAstat-Dx Respiratory SARS-CoV-2 Panel. Limit of detection for the different lineages was characterized. RESULTS: Comparable efficiencies and linearity for all samples resulted in R(2) ≥0.99, covering a dynamic range of 1,000,000-100 copies/mL for the SARS-CoV-2 assay, showing linear correlation between Ct values and viral load down to 300 copies/mL. CONCLUSION: The SARS-CoV-2 Ct values provided by the QIAstat-Dx® Respiratory SARS-CoV-2 Panel could be used as a surrogate for viral load given the linear correlation between Ct values and viral concentration down to limit of detection. This panel allows to obtain reproducible Ct values for SARS-CoV-2 ribonucleic acid downstream of the sample collection, reducing the sample-to-Ct workflow variability. Ct values can help provide a reliable assessment and comparison of viral loads in patients when tested with the QIAstat-Dx Respiratory SARS-CoV-2 Panel. |
format | Online Article Text |
id | pubmed-9273520 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | The Authors. Published by Elsevier Ltd on behalf of International Society for Infectious Diseases. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92735202022-07-12 Ct values as a diagnostic tool for monitoring SARS-CoV-2 viral load using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel Juanola-Falgarona, Martí Peñarrubia, Luis Jiménez-Guzmán, Sara Porco, Roberto Congost-Teixidor, Clàudia Varo-Velázquez, Marta Rao, Sonia N Pueyo, Gemma Manissero, Davide Pareja, Josep Int J Infect Dis Article OBJECTIVES: Qualitative real-time polymerase chain reaction tests are not designed to provide quantitative or semiquantitative results because cycle threshold (Ct) values are not normalized to standardized controls of known concentration. The aim of this study was to characterize SARS-CoV-2 viral loads based on Ct values, using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel. METHODS: Different lineages of SARS-CoV-2 clinical samples and the World Health Organization international standard were used to assess the linearity of the QIAstat-Dx Respiratory SARS-CoV-2 Panel. Limit of detection for the different lineages was characterized. RESULTS: Comparable efficiencies and linearity for all samples resulted in R(2) ≥0.99, covering a dynamic range of 1,000,000-100 copies/mL for the SARS-CoV-2 assay, showing linear correlation between Ct values and viral load down to 300 copies/mL. CONCLUSION: The SARS-CoV-2 Ct values provided by the QIAstat-Dx® Respiratory SARS-CoV-2 Panel could be used as a surrogate for viral load given the linear correlation between Ct values and viral concentration down to limit of detection. This panel allows to obtain reproducible Ct values for SARS-CoV-2 ribonucleic acid downstream of the sample collection, reducing the sample-to-Ct workflow variability. Ct values can help provide a reliable assessment and comparison of viral loads in patients when tested with the QIAstat-Dx Respiratory SARS-CoV-2 Panel. The Authors. Published by Elsevier Ltd on behalf of International Society for Infectious Diseases. 2022-09 2022-07-12 /pmc/articles/PMC9273520/ /pubmed/35840097 http://dx.doi.org/10.1016/j.ijid.2022.07.022 Text en © 2022 The Authors. Published by Elsevier Ltd on behalf of International Society for Infectious Diseases. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Juanola-Falgarona, Martí Peñarrubia, Luis Jiménez-Guzmán, Sara Porco, Roberto Congost-Teixidor, Clàudia Varo-Velázquez, Marta Rao, Sonia N Pueyo, Gemma Manissero, Davide Pareja, Josep Ct values as a diagnostic tool for monitoring SARS-CoV-2 viral load using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel |
title | Ct values as a diagnostic tool for monitoring SARS-CoV-2 viral load using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel |
title_full | Ct values as a diagnostic tool for monitoring SARS-CoV-2 viral load using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel |
title_fullStr | Ct values as a diagnostic tool for monitoring SARS-CoV-2 viral load using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel |
title_full_unstemmed | Ct values as a diagnostic tool for monitoring SARS-CoV-2 viral load using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel |
title_short | Ct values as a diagnostic tool for monitoring SARS-CoV-2 viral load using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel |
title_sort | ct values as a diagnostic tool for monitoring sars-cov-2 viral load using the qiastat-dx® respiratory sars-cov-2 panel |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9273520/ https://www.ncbi.nlm.nih.gov/pubmed/35840097 http://dx.doi.org/10.1016/j.ijid.2022.07.022 |
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