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Ct values as a diagnostic tool for monitoring SARS-CoV-2 viral load using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel

OBJECTIVES: Qualitative real-time polymerase chain reaction tests are not designed to provide quantitative or semiquantitative results because cycle threshold (Ct) values are not normalized to standardized controls of known concentration. The aim of this study was to characterize SARS-CoV-2 viral lo...

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Autores principales: Juanola-Falgarona, Martí, Peñarrubia, Luis, Jiménez-Guzmán, Sara, Porco, Roberto, Congost-Teixidor, Clàudia, Varo-Velázquez, Marta, Rao, Sonia N, Pueyo, Gemma, Manissero, Davide, Pareja, Josep
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Authors. Published by Elsevier Ltd on behalf of International Society for Infectious Diseases. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9273520/
https://www.ncbi.nlm.nih.gov/pubmed/35840097
http://dx.doi.org/10.1016/j.ijid.2022.07.022
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author Juanola-Falgarona, Martí
Peñarrubia, Luis
Jiménez-Guzmán, Sara
Porco, Roberto
Congost-Teixidor, Clàudia
Varo-Velázquez, Marta
Rao, Sonia N
Pueyo, Gemma
Manissero, Davide
Pareja, Josep
author_facet Juanola-Falgarona, Martí
Peñarrubia, Luis
Jiménez-Guzmán, Sara
Porco, Roberto
Congost-Teixidor, Clàudia
Varo-Velázquez, Marta
Rao, Sonia N
Pueyo, Gemma
Manissero, Davide
Pareja, Josep
author_sort Juanola-Falgarona, Martí
collection PubMed
description OBJECTIVES: Qualitative real-time polymerase chain reaction tests are not designed to provide quantitative or semiquantitative results because cycle threshold (Ct) values are not normalized to standardized controls of known concentration. The aim of this study was to characterize SARS-CoV-2 viral loads based on Ct values, using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel. METHODS: Different lineages of SARS-CoV-2 clinical samples and the World Health Organization international standard were used to assess the linearity of the QIAstat-Dx Respiratory SARS-CoV-2 Panel. Limit of detection for the different lineages was characterized. RESULTS: Comparable efficiencies and linearity for all samples resulted in R(2) ≥0.99, covering a dynamic range of 1,000,000-100 copies/mL for the SARS-CoV-2 assay, showing linear correlation between Ct values and viral load down to 300 copies/mL. CONCLUSION: The SARS-CoV-2 Ct values provided by the QIAstat-Dx® Respiratory SARS-CoV-2 Panel could be used as a surrogate for viral load given the linear correlation between Ct values and viral concentration down to limit of detection. This panel allows to obtain reproducible Ct values for SARS-CoV-2 ribonucleic acid downstream of the sample collection, reducing the sample-to-Ct workflow variability. Ct values can help provide a reliable assessment and comparison of viral loads in patients when tested with the QIAstat-Dx Respiratory SARS-CoV-2 Panel.
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spelling pubmed-92735202022-07-12 Ct values as a diagnostic tool for monitoring SARS-CoV-2 viral load using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel Juanola-Falgarona, Martí Peñarrubia, Luis Jiménez-Guzmán, Sara Porco, Roberto Congost-Teixidor, Clàudia Varo-Velázquez, Marta Rao, Sonia N Pueyo, Gemma Manissero, Davide Pareja, Josep Int J Infect Dis Article OBJECTIVES: Qualitative real-time polymerase chain reaction tests are not designed to provide quantitative or semiquantitative results because cycle threshold (Ct) values are not normalized to standardized controls of known concentration. The aim of this study was to characterize SARS-CoV-2 viral loads based on Ct values, using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel. METHODS: Different lineages of SARS-CoV-2 clinical samples and the World Health Organization international standard were used to assess the linearity of the QIAstat-Dx Respiratory SARS-CoV-2 Panel. Limit of detection for the different lineages was characterized. RESULTS: Comparable efficiencies and linearity for all samples resulted in R(2) ≥0.99, covering a dynamic range of 1,000,000-100 copies/mL for the SARS-CoV-2 assay, showing linear correlation between Ct values and viral load down to 300 copies/mL. CONCLUSION: The SARS-CoV-2 Ct values provided by the QIAstat-Dx® Respiratory SARS-CoV-2 Panel could be used as a surrogate for viral load given the linear correlation between Ct values and viral concentration down to limit of detection. This panel allows to obtain reproducible Ct values for SARS-CoV-2 ribonucleic acid downstream of the sample collection, reducing the sample-to-Ct workflow variability. Ct values can help provide a reliable assessment and comparison of viral loads in patients when tested with the QIAstat-Dx Respiratory SARS-CoV-2 Panel. The Authors. Published by Elsevier Ltd on behalf of International Society for Infectious Diseases. 2022-09 2022-07-12 /pmc/articles/PMC9273520/ /pubmed/35840097 http://dx.doi.org/10.1016/j.ijid.2022.07.022 Text en © 2022 The Authors. Published by Elsevier Ltd on behalf of International Society for Infectious Diseases. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Juanola-Falgarona, Martí
Peñarrubia, Luis
Jiménez-Guzmán, Sara
Porco, Roberto
Congost-Teixidor, Clàudia
Varo-Velázquez, Marta
Rao, Sonia N
Pueyo, Gemma
Manissero, Davide
Pareja, Josep
Ct values as a diagnostic tool for monitoring SARS-CoV-2 viral load using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel
title Ct values as a diagnostic tool for monitoring SARS-CoV-2 viral load using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel
title_full Ct values as a diagnostic tool for monitoring SARS-CoV-2 viral load using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel
title_fullStr Ct values as a diagnostic tool for monitoring SARS-CoV-2 viral load using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel
title_full_unstemmed Ct values as a diagnostic tool for monitoring SARS-CoV-2 viral load using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel
title_short Ct values as a diagnostic tool for monitoring SARS-CoV-2 viral load using the QIAstat-Dx® Respiratory SARS-CoV-2 Panel
title_sort ct values as a diagnostic tool for monitoring sars-cov-2 viral load using the qiastat-dx® respiratory sars-cov-2 panel
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9273520/
https://www.ncbi.nlm.nih.gov/pubmed/35840097
http://dx.doi.org/10.1016/j.ijid.2022.07.022
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