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The complete chloroplast genome sequences of the Sicyos angulatus (Cucurbitaceae)
Sicyos angulatus (burcucumber) is an annual plant native to the north-eastern America. We investigated the genomic characteristics of the complete chloroplast (CP) genome in S. angulatus with a de novo strategy. The CP genome was 154,986 bp in length including 84 protein coding genes, 37 tRNA genes,...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9275491/ https://www.ncbi.nlm.nih.gov/pubmed/35837495 http://dx.doi.org/10.1080/23802359.2022.2093672 |
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author | Choi, Tae-Young Kang, Eun Su Son, Dong Chan Lee, Soo-Rang |
author_facet | Choi, Tae-Young Kang, Eun Su Son, Dong Chan Lee, Soo-Rang |
author_sort | Choi, Tae-Young |
collection | PubMed |
description | Sicyos angulatus (burcucumber) is an annual plant native to the north-eastern America. We investigated the genomic characteristics of the complete chloroplast (CP) genome in S. angulatus with a de novo strategy. The CP genome was 154,986 bp in length including 84 protein coding genes, 37 tRNA genes, and eight rRNA genes. It has large single-copy (LSC) (84,355 bp), small single-copy (SSC) (18,079 bp), and a pair of inverted repeats (IRs) (26,276 bp), which consists of typical quadripartite structure. A phylogenetic analysis of 64 CP genomes from Cucurbitaceae revealed that the Sicyos angulatus was separated from other species and clustered together with Sicyos edulis, which is congruent with previous studies. Infrafamilial classification system inferred from our data was also congruent with previous study based on CP DNA data. |
format | Online Article Text |
id | pubmed-9275491 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-92754912022-07-13 The complete chloroplast genome sequences of the Sicyos angulatus (Cucurbitaceae) Choi, Tae-Young Kang, Eun Su Son, Dong Chan Lee, Soo-Rang Mitochondrial DNA B Resour Mitogenome Announcement Sicyos angulatus (burcucumber) is an annual plant native to the north-eastern America. We investigated the genomic characteristics of the complete chloroplast (CP) genome in S. angulatus with a de novo strategy. The CP genome was 154,986 bp in length including 84 protein coding genes, 37 tRNA genes, and eight rRNA genes. It has large single-copy (LSC) (84,355 bp), small single-copy (SSC) (18,079 bp), and a pair of inverted repeats (IRs) (26,276 bp), which consists of typical quadripartite structure. A phylogenetic analysis of 64 CP genomes from Cucurbitaceae revealed that the Sicyos angulatus was separated from other species and clustered together with Sicyos edulis, which is congruent with previous studies. Infrafamilial classification system inferred from our data was also congruent with previous study based on CP DNA data. Taylor & Francis 2022-07-08 /pmc/articles/PMC9275491/ /pubmed/35837495 http://dx.doi.org/10.1080/23802359.2022.2093672 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Choi, Tae-Young Kang, Eun Su Son, Dong Chan Lee, Soo-Rang The complete chloroplast genome sequences of the Sicyos angulatus (Cucurbitaceae) |
title | The complete chloroplast genome sequences of the Sicyos angulatus (Cucurbitaceae) |
title_full | The complete chloroplast genome sequences of the Sicyos angulatus (Cucurbitaceae) |
title_fullStr | The complete chloroplast genome sequences of the Sicyos angulatus (Cucurbitaceae) |
title_full_unstemmed | The complete chloroplast genome sequences of the Sicyos angulatus (Cucurbitaceae) |
title_short | The complete chloroplast genome sequences of the Sicyos angulatus (Cucurbitaceae) |
title_sort | complete chloroplast genome sequences of the sicyos angulatus (cucurbitaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9275491/ https://www.ncbi.nlm.nih.gov/pubmed/35837495 http://dx.doi.org/10.1080/23802359.2022.2093672 |
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