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The complete chloroplast genome sequences of the Sicyos angulatus (Cucurbitaceae)

Sicyos angulatus (burcucumber) is an annual plant native to the north-eastern America. We investigated the genomic characteristics of the complete chloroplast (CP) genome in S. angulatus with a de novo strategy. The CP genome was 154,986 bp in length including 84 protein coding genes, 37 tRNA genes,...

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Autores principales: Choi, Tae-Young, Kang, Eun Su, Son, Dong Chan, Lee, Soo-Rang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9275491/
https://www.ncbi.nlm.nih.gov/pubmed/35837495
http://dx.doi.org/10.1080/23802359.2022.2093672
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author Choi, Tae-Young
Kang, Eun Su
Son, Dong Chan
Lee, Soo-Rang
author_facet Choi, Tae-Young
Kang, Eun Su
Son, Dong Chan
Lee, Soo-Rang
author_sort Choi, Tae-Young
collection PubMed
description Sicyos angulatus (burcucumber) is an annual plant native to the north-eastern America. We investigated the genomic characteristics of the complete chloroplast (CP) genome in S. angulatus with a de novo strategy. The CP genome was 154,986 bp in length including 84 protein coding genes, 37 tRNA genes, and eight rRNA genes. It has large single-copy (LSC) (84,355 bp), small single-copy (SSC) (18,079 bp), and a pair of inverted repeats (IRs) (26,276 bp), which consists of typical quadripartite structure. A phylogenetic analysis of 64 CP genomes from Cucurbitaceae revealed that the Sicyos angulatus was separated from other species and clustered together with Sicyos edulis, which is congruent with previous studies. Infrafamilial classification system inferred from our data was also congruent with previous study based on CP DNA data.
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spelling pubmed-92754912022-07-13 The complete chloroplast genome sequences of the Sicyos angulatus (Cucurbitaceae) Choi, Tae-Young Kang, Eun Su Son, Dong Chan Lee, Soo-Rang Mitochondrial DNA B Resour Mitogenome Announcement Sicyos angulatus (burcucumber) is an annual plant native to the north-eastern America. We investigated the genomic characteristics of the complete chloroplast (CP) genome in S. angulatus with a de novo strategy. The CP genome was 154,986 bp in length including 84 protein coding genes, 37 tRNA genes, and eight rRNA genes. It has large single-copy (LSC) (84,355 bp), small single-copy (SSC) (18,079 bp), and a pair of inverted repeats (IRs) (26,276 bp), which consists of typical quadripartite structure. A phylogenetic analysis of 64 CP genomes from Cucurbitaceae revealed that the Sicyos angulatus was separated from other species and clustered together with Sicyos edulis, which is congruent with previous studies. Infrafamilial classification system inferred from our data was also congruent with previous study based on CP DNA data. Taylor & Francis 2022-07-08 /pmc/articles/PMC9275491/ /pubmed/35837495 http://dx.doi.org/10.1080/23802359.2022.2093672 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Choi, Tae-Young
Kang, Eun Su
Son, Dong Chan
Lee, Soo-Rang
The complete chloroplast genome sequences of the Sicyos angulatus (Cucurbitaceae)
title The complete chloroplast genome sequences of the Sicyos angulatus (Cucurbitaceae)
title_full The complete chloroplast genome sequences of the Sicyos angulatus (Cucurbitaceae)
title_fullStr The complete chloroplast genome sequences of the Sicyos angulatus (Cucurbitaceae)
title_full_unstemmed The complete chloroplast genome sequences of the Sicyos angulatus (Cucurbitaceae)
title_short The complete chloroplast genome sequences of the Sicyos angulatus (Cucurbitaceae)
title_sort complete chloroplast genome sequences of the sicyos angulatus (cucurbitaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9275491/
https://www.ncbi.nlm.nih.gov/pubmed/35837495
http://dx.doi.org/10.1080/23802359.2022.2093672
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