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Construction of a Novel MYC-Associated ceRNA Regulatory Network to Identify Prognostic Biomarkers in Colon Adenocarcinoma

Colorectal cancer (CRC) includes colon adenocarcinoma (COAD) and rectal adenocarcinoma (READ). Competitive endogenous RNA (ceRNA) is crucial for cancer pathogenesis. Abnormal expression of MYC is generally associated with a poor colon adenocarcinoma prognosis. The present study aimed to identify a n...

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Autores principales: Xin, Rui, Tang, Xiao-Mei, Jiang, Ying-Jie, Yu, Fei, Li, Sha, Jia, Cheng-You, Wang, Gao-Ren, Fu, Da, Liu, Ji-Bin, Ma, Yu-Shui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9277212/
https://www.ncbi.nlm.nih.gov/pubmed/35847359
http://dx.doi.org/10.1155/2022/3216285
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author Xin, Rui
Tang, Xiao-Mei
Jiang, Ying-Jie
Yu, Fei
Li, Sha
Jia, Cheng-You
Wang, Gao-Ren
Fu, Da
Liu, Ji-Bin
Ma, Yu-Shui
author_facet Xin, Rui
Tang, Xiao-Mei
Jiang, Ying-Jie
Yu, Fei
Li, Sha
Jia, Cheng-You
Wang, Gao-Ren
Fu, Da
Liu, Ji-Bin
Ma, Yu-Shui
author_sort Xin, Rui
collection PubMed
description Colorectal cancer (CRC) includes colon adenocarcinoma (COAD) and rectal adenocarcinoma (READ). Competitive endogenous RNA (ceRNA) is crucial for cancer pathogenesis. Abnormal expression of MYC is generally associated with a poor colon adenocarcinoma prognosis. The present study aimed to identify a novel MYC-associated ceRNA regulatory network and identify potential prognostic markers associated with COAD. We obtained the transcriptome sequencing profiles of 462 COAD cases from the TCGA database and analyzed differentially expressed genes (DEGs) in MYC high expression (MYC(high)) and MYC low expression (Myc(low)) tumors. We identified an important lncRNA, LINC00114, which effectively predicts overall survival and plays a protective role in COAD. Moreover, the LINC00114/miR-216a-5p axis was identified as a clinical prognostic model. The predicted target genes of the LINC00114/miR-216a-5p axis include uromodulin Like 1 (UMODL1) and oncoprotein induced transcript 3 (OIT3), which are closely related to the survival and prognosis of COAD patients. In summary, we constructed a novel ceRNA regulatory network and identified potential biomarkers for the targeted therapy and prognosis of COAD.
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spelling pubmed-92772122022-07-14 Construction of a Novel MYC-Associated ceRNA Regulatory Network to Identify Prognostic Biomarkers in Colon Adenocarcinoma Xin, Rui Tang, Xiao-Mei Jiang, Ying-Jie Yu, Fei Li, Sha Jia, Cheng-You Wang, Gao-Ren Fu, Da Liu, Ji-Bin Ma, Yu-Shui J Oncol Research Article Colorectal cancer (CRC) includes colon adenocarcinoma (COAD) and rectal adenocarcinoma (READ). Competitive endogenous RNA (ceRNA) is crucial for cancer pathogenesis. Abnormal expression of MYC is generally associated with a poor colon adenocarcinoma prognosis. The present study aimed to identify a novel MYC-associated ceRNA regulatory network and identify potential prognostic markers associated with COAD. We obtained the transcriptome sequencing profiles of 462 COAD cases from the TCGA database and analyzed differentially expressed genes (DEGs) in MYC high expression (MYC(high)) and MYC low expression (Myc(low)) tumors. We identified an important lncRNA, LINC00114, which effectively predicts overall survival and plays a protective role in COAD. Moreover, the LINC00114/miR-216a-5p axis was identified as a clinical prognostic model. The predicted target genes of the LINC00114/miR-216a-5p axis include uromodulin Like 1 (UMODL1) and oncoprotein induced transcript 3 (OIT3), which are closely related to the survival and prognosis of COAD patients. In summary, we constructed a novel ceRNA regulatory network and identified potential biomarkers for the targeted therapy and prognosis of COAD. Hindawi 2022-07-05 /pmc/articles/PMC9277212/ /pubmed/35847359 http://dx.doi.org/10.1155/2022/3216285 Text en Copyright © 2022 Rui Xin et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Xin, Rui
Tang, Xiao-Mei
Jiang, Ying-Jie
Yu, Fei
Li, Sha
Jia, Cheng-You
Wang, Gao-Ren
Fu, Da
Liu, Ji-Bin
Ma, Yu-Shui
Construction of a Novel MYC-Associated ceRNA Regulatory Network to Identify Prognostic Biomarkers in Colon Adenocarcinoma
title Construction of a Novel MYC-Associated ceRNA Regulatory Network to Identify Prognostic Biomarkers in Colon Adenocarcinoma
title_full Construction of a Novel MYC-Associated ceRNA Regulatory Network to Identify Prognostic Biomarkers in Colon Adenocarcinoma
title_fullStr Construction of a Novel MYC-Associated ceRNA Regulatory Network to Identify Prognostic Biomarkers in Colon Adenocarcinoma
title_full_unstemmed Construction of a Novel MYC-Associated ceRNA Regulatory Network to Identify Prognostic Biomarkers in Colon Adenocarcinoma
title_short Construction of a Novel MYC-Associated ceRNA Regulatory Network to Identify Prognostic Biomarkers in Colon Adenocarcinoma
title_sort construction of a novel myc-associated cerna regulatory network to identify prognostic biomarkers in colon adenocarcinoma
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9277212/
https://www.ncbi.nlm.nih.gov/pubmed/35847359
http://dx.doi.org/10.1155/2022/3216285
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