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GFCNet: Utilizing graph feature collection networks for coronavirus knowledge graph embeddings

In response to fighting COVID-19 pandemic, researchers in machine learning and artificial intelligence have constructed some medical knowledge graphs (KG) based on existing COVID-19 datasets, however, these KGs contain a considerable amount of semantic relations which are incomplete or missing. In t...

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Autores principales: Xie, Zhiwen, Zhu, Runjie, Liu, Jin, Zhou, Guangyou, Huang, Jimmy Xiangji, Cui, Xiaohui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9279179/
https://www.ncbi.nlm.nih.gov/pubmed/35855405
http://dx.doi.org/10.1016/j.ins.2022.07.031
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author Xie, Zhiwen
Zhu, Runjie
Liu, Jin
Zhou, Guangyou
Huang, Jimmy Xiangji
Cui, Xiaohui
author_facet Xie, Zhiwen
Zhu, Runjie
Liu, Jin
Zhou, Guangyou
Huang, Jimmy Xiangji
Cui, Xiaohui
author_sort Xie, Zhiwen
collection PubMed
description In response to fighting COVID-19 pandemic, researchers in machine learning and artificial intelligence have constructed some medical knowledge graphs (KG) based on existing COVID-19 datasets, however, these KGs contain a considerable amount of semantic relations which are incomplete or missing. In this paper, we focus on the task of knowledge graph embedding (KGE), which serves an important solution to infer the missing relations. In the past, there have been a collection of knowledge graph embedding models with different scoring functions to learn entity and relation embeddings published. However, these models share the same problems of rarely taking important features of KG like attribute features, other than relation triples, into account, while dealing with the heterogeneous, complex and incomplete COVID-19 medical data. To address the above issue, we propose a graph feature collection network (GFCNet) for COVID-19 KGE task, which considers both neighbor and attribute features in KGs. The extensive experiments conducted on the COVID-19 drug KG dataset show promising results and prove the effectiveness and efficiency of our proposed model. In addition, we also explain the future directions of deepening the study on COVID-19 KGE task.
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spelling pubmed-92791792022-07-14 GFCNet: Utilizing graph feature collection networks for coronavirus knowledge graph embeddings Xie, Zhiwen Zhu, Runjie Liu, Jin Zhou, Guangyou Huang, Jimmy Xiangji Cui, Xiaohui Inf Sci (N Y) Article In response to fighting COVID-19 pandemic, researchers in machine learning and artificial intelligence have constructed some medical knowledge graphs (KG) based on existing COVID-19 datasets, however, these KGs contain a considerable amount of semantic relations which are incomplete or missing. In this paper, we focus on the task of knowledge graph embedding (KGE), which serves an important solution to infer the missing relations. In the past, there have been a collection of knowledge graph embedding models with different scoring functions to learn entity and relation embeddings published. However, these models share the same problems of rarely taking important features of KG like attribute features, other than relation triples, into account, while dealing with the heterogeneous, complex and incomplete COVID-19 medical data. To address the above issue, we propose a graph feature collection network (GFCNet) for COVID-19 KGE task, which considers both neighbor and attribute features in KGs. The extensive experiments conducted on the COVID-19 drug KG dataset show promising results and prove the effectiveness and efficiency of our proposed model. In addition, we also explain the future directions of deepening the study on COVID-19 KGE task. Elsevier Inc. 2022-08 2022-07-14 /pmc/articles/PMC9279179/ /pubmed/35855405 http://dx.doi.org/10.1016/j.ins.2022.07.031 Text en © 2022 Elsevier Inc. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Xie, Zhiwen
Zhu, Runjie
Liu, Jin
Zhou, Guangyou
Huang, Jimmy Xiangji
Cui, Xiaohui
GFCNet: Utilizing graph feature collection networks for coronavirus knowledge graph embeddings
title GFCNet: Utilizing graph feature collection networks for coronavirus knowledge graph embeddings
title_full GFCNet: Utilizing graph feature collection networks for coronavirus knowledge graph embeddings
title_fullStr GFCNet: Utilizing graph feature collection networks for coronavirus knowledge graph embeddings
title_full_unstemmed GFCNet: Utilizing graph feature collection networks for coronavirus knowledge graph embeddings
title_short GFCNet: Utilizing graph feature collection networks for coronavirus knowledge graph embeddings
title_sort gfcnet: utilizing graph feature collection networks for coronavirus knowledge graph embeddings
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9279179/
https://www.ncbi.nlm.nih.gov/pubmed/35855405
http://dx.doi.org/10.1016/j.ins.2022.07.031
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