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Application of machine learning methods for the prediction of true fasting status in patients performing blood tests
The fasting blood glucose (FBG) values extracted from electronic medical records (EMR) are assumed valid in existing research, which may cause diagnostic bias due to misclassification of fasting status. We proposed a machine learning (ML) algorithm to predict the fasting status of blood samples. Thi...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9279373/ https://www.ncbi.nlm.nih.gov/pubmed/35831336 http://dx.doi.org/10.1038/s41598-022-15161-2 |
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author | Chang, Shih-Ni Hsiao, Ya-Luan Lin, Che-Chen Sun, Chuan-Hu Chen, Pei-Shan Wu, Min-Yen Chen, Sheng-Hsuan Chiang, Hsiu-Yin Hsiao, Chiung-Tzu King, Emily K. Chang, Chun-Min Kuo, Chin-Chi |
author_facet | Chang, Shih-Ni Hsiao, Ya-Luan Lin, Che-Chen Sun, Chuan-Hu Chen, Pei-Shan Wu, Min-Yen Chen, Sheng-Hsuan Chiang, Hsiu-Yin Hsiao, Chiung-Tzu King, Emily K. Chang, Chun-Min Kuo, Chin-Chi |
author_sort | Chang, Shih-Ni |
collection | PubMed |
description | The fasting blood glucose (FBG) values extracted from electronic medical records (EMR) are assumed valid in existing research, which may cause diagnostic bias due to misclassification of fasting status. We proposed a machine learning (ML) algorithm to predict the fasting status of blood samples. This cross-sectional study was conducted using the EMR of a medical center from 2003 to 2018 and a total of 2,196,833 ontological FBGs from the outpatient service were enrolled. The theoretical true fasting status are identified by comparing the values of ontological FBG with average glucose levels derived from concomitant tested HbA1c based on multi-criteria. In addition to multiple logistic regression, we extracted 67 features to predict the fasting status by eXtreme Gradient Boosting (XGBoost). The discrimination and calibration of the prediction models were also assessed. Real-world performance was gauged by the prevalence of ineffective glucose measurement (IGM). Of the 784,340 ontologically labeled fasting samples, 77.1% were considered theoretical FBGs. The median (IQR) glucose and HbA1c level of ontological and theoretical fasting samples in patients without diabetes mellitus (DM) were 94.0 (87.0, 102.0) mg/dL and 5.6 (5.4, 5.9)%, and 92.0 (86.0, 99.0) mg/dL and 5.6 (5.4, 5.9)%, respectively. The XGBoost showed comparable calibration and AUROC of 0.887 than that of 0.868 in multiple logistic regression in the parsimonious approach and identified important predictors of glucose level, home-to-hospital distance, age, and concomitantly serum creatinine and lipid testing. The prevalence of IGM dropped from 27.8% based on ontological FBGs to 0.48% by using algorithm-verified FBGs. The proposed ML algorithm or multiple logistic regression model aids in verification of the fasting status. |
format | Online Article Text |
id | pubmed-9279373 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-92793732022-07-15 Application of machine learning methods for the prediction of true fasting status in patients performing blood tests Chang, Shih-Ni Hsiao, Ya-Luan Lin, Che-Chen Sun, Chuan-Hu Chen, Pei-Shan Wu, Min-Yen Chen, Sheng-Hsuan Chiang, Hsiu-Yin Hsiao, Chiung-Tzu King, Emily K. Chang, Chun-Min Kuo, Chin-Chi Sci Rep Article The fasting blood glucose (FBG) values extracted from electronic medical records (EMR) are assumed valid in existing research, which may cause diagnostic bias due to misclassification of fasting status. We proposed a machine learning (ML) algorithm to predict the fasting status of blood samples. This cross-sectional study was conducted using the EMR of a medical center from 2003 to 2018 and a total of 2,196,833 ontological FBGs from the outpatient service were enrolled. The theoretical true fasting status are identified by comparing the values of ontological FBG with average glucose levels derived from concomitant tested HbA1c based on multi-criteria. In addition to multiple logistic regression, we extracted 67 features to predict the fasting status by eXtreme Gradient Boosting (XGBoost). The discrimination and calibration of the prediction models were also assessed. Real-world performance was gauged by the prevalence of ineffective glucose measurement (IGM). Of the 784,340 ontologically labeled fasting samples, 77.1% were considered theoretical FBGs. The median (IQR) glucose and HbA1c level of ontological and theoretical fasting samples in patients without diabetes mellitus (DM) were 94.0 (87.0, 102.0) mg/dL and 5.6 (5.4, 5.9)%, and 92.0 (86.0, 99.0) mg/dL and 5.6 (5.4, 5.9)%, respectively. The XGBoost showed comparable calibration and AUROC of 0.887 than that of 0.868 in multiple logistic regression in the parsimonious approach and identified important predictors of glucose level, home-to-hospital distance, age, and concomitantly serum creatinine and lipid testing. The prevalence of IGM dropped from 27.8% based on ontological FBGs to 0.48% by using algorithm-verified FBGs. The proposed ML algorithm or multiple logistic regression model aids in verification of the fasting status. Nature Publishing Group UK 2022-07-13 /pmc/articles/PMC9279373/ /pubmed/35831336 http://dx.doi.org/10.1038/s41598-022-15161-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Chang, Shih-Ni Hsiao, Ya-Luan Lin, Che-Chen Sun, Chuan-Hu Chen, Pei-Shan Wu, Min-Yen Chen, Sheng-Hsuan Chiang, Hsiu-Yin Hsiao, Chiung-Tzu King, Emily K. Chang, Chun-Min Kuo, Chin-Chi Application of machine learning methods for the prediction of true fasting status in patients performing blood tests |
title | Application of machine learning methods for the prediction of true fasting status in patients performing blood tests |
title_full | Application of machine learning methods for the prediction of true fasting status in patients performing blood tests |
title_fullStr | Application of machine learning methods for the prediction of true fasting status in patients performing blood tests |
title_full_unstemmed | Application of machine learning methods for the prediction of true fasting status in patients performing blood tests |
title_short | Application of machine learning methods for the prediction of true fasting status in patients performing blood tests |
title_sort | application of machine learning methods for the prediction of true fasting status in patients performing blood tests |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9279373/ https://www.ncbi.nlm.nih.gov/pubmed/35831336 http://dx.doi.org/10.1038/s41598-022-15161-2 |
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