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Instant diagnosis of gastroscopic biopsy via deep-learned single-shot femtosecond stimulated Raman histology

Gastroscopic biopsy provides the only effective method for gastric cancer diagnosis, but the gold standard histopathology is time-consuming and incompatible with gastroscopy. Conventional stimulated Raman scattering (SRS) microscopy has shown promise in label-free diagnosis on human tissues, yet it...

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Autores principales: Liu, Zhijie, Su, Wei, Ao, Jianpeng, Wang, Min, Jiang, Qiuli, He, Jie, Gao, Hua, Lei, Shu, Nie, Jinshan, Yan, Xuefeng, Guo, Xiaojing, Zhou, Pinghong, Hu, Hao, Ji, Minbiao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9279377/
https://www.ncbi.nlm.nih.gov/pubmed/35831299
http://dx.doi.org/10.1038/s41467-022-31339-8
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author Liu, Zhijie
Su, Wei
Ao, Jianpeng
Wang, Min
Jiang, Qiuli
He, Jie
Gao, Hua
Lei, Shu
Nie, Jinshan
Yan, Xuefeng
Guo, Xiaojing
Zhou, Pinghong
Hu, Hao
Ji, Minbiao
author_facet Liu, Zhijie
Su, Wei
Ao, Jianpeng
Wang, Min
Jiang, Qiuli
He, Jie
Gao, Hua
Lei, Shu
Nie, Jinshan
Yan, Xuefeng
Guo, Xiaojing
Zhou, Pinghong
Hu, Hao
Ji, Minbiao
author_sort Liu, Zhijie
collection PubMed
description Gastroscopic biopsy provides the only effective method for gastric cancer diagnosis, but the gold standard histopathology is time-consuming and incompatible with gastroscopy. Conventional stimulated Raman scattering (SRS) microscopy has shown promise in label-free diagnosis on human tissues, yet it requires the tuning of picosecond lasers to achieve chemical specificity at the cost of time and complexity. Here, we demonstrate that single-shot femtosecond SRS (femto-SRS) reaches the maximum speed and sensitivity with preserved chemical resolution by integrating with U-Net. Fresh gastroscopic biopsy is imaged in <60 s, revealing essential histoarchitectural hallmarks perfectly agreed with standard histopathology. Moreover, a diagnostic neural network (CNN) is constructed based on images from 279 patients that predicts gastric cancer with accuracy >96%. We further demonstrate semantic segmentation of intratumor heterogeneity and evaluation of resection margins of endoscopic submucosal dissection (ESD) tissues to simulate rapid and automated intraoperative diagnosis. Our method holds potential for synchronizing gastroscopy and histopathological diagnosis.
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spelling pubmed-92793772022-07-15 Instant diagnosis of gastroscopic biopsy via deep-learned single-shot femtosecond stimulated Raman histology Liu, Zhijie Su, Wei Ao, Jianpeng Wang, Min Jiang, Qiuli He, Jie Gao, Hua Lei, Shu Nie, Jinshan Yan, Xuefeng Guo, Xiaojing Zhou, Pinghong Hu, Hao Ji, Minbiao Nat Commun Article Gastroscopic biopsy provides the only effective method for gastric cancer diagnosis, but the gold standard histopathology is time-consuming and incompatible with gastroscopy. Conventional stimulated Raman scattering (SRS) microscopy has shown promise in label-free diagnosis on human tissues, yet it requires the tuning of picosecond lasers to achieve chemical specificity at the cost of time and complexity. Here, we demonstrate that single-shot femtosecond SRS (femto-SRS) reaches the maximum speed and sensitivity with preserved chemical resolution by integrating with U-Net. Fresh gastroscopic biopsy is imaged in <60 s, revealing essential histoarchitectural hallmarks perfectly agreed with standard histopathology. Moreover, a diagnostic neural network (CNN) is constructed based on images from 279 patients that predicts gastric cancer with accuracy >96%. We further demonstrate semantic segmentation of intratumor heterogeneity and evaluation of resection margins of endoscopic submucosal dissection (ESD) tissues to simulate rapid and automated intraoperative diagnosis. Our method holds potential for synchronizing gastroscopy and histopathological diagnosis. Nature Publishing Group UK 2022-07-13 /pmc/articles/PMC9279377/ /pubmed/35831299 http://dx.doi.org/10.1038/s41467-022-31339-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Liu, Zhijie
Su, Wei
Ao, Jianpeng
Wang, Min
Jiang, Qiuli
He, Jie
Gao, Hua
Lei, Shu
Nie, Jinshan
Yan, Xuefeng
Guo, Xiaojing
Zhou, Pinghong
Hu, Hao
Ji, Minbiao
Instant diagnosis of gastroscopic biopsy via deep-learned single-shot femtosecond stimulated Raman histology
title Instant diagnosis of gastroscopic biopsy via deep-learned single-shot femtosecond stimulated Raman histology
title_full Instant diagnosis of gastroscopic biopsy via deep-learned single-shot femtosecond stimulated Raman histology
title_fullStr Instant diagnosis of gastroscopic biopsy via deep-learned single-shot femtosecond stimulated Raman histology
title_full_unstemmed Instant diagnosis of gastroscopic biopsy via deep-learned single-shot femtosecond stimulated Raman histology
title_short Instant diagnosis of gastroscopic biopsy via deep-learned single-shot femtosecond stimulated Raman histology
title_sort instant diagnosis of gastroscopic biopsy via deep-learned single-shot femtosecond stimulated raman histology
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9279377/
https://www.ncbi.nlm.nih.gov/pubmed/35831299
http://dx.doi.org/10.1038/s41467-022-31339-8
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