Cargando…

Transcriptome analysis uncovers the autophagy‐mediated regulatory patterns of the immune microenvironment in dilated cardiomyopathy

The relationship between autophagy and immunity has been well studied. However, little is known about the role of autophagy in the immune microenvironment during the progression of dilated cardiomyopathy (DCM). Therefore, this study aims to uncover the effect of autophagy on the immune microenvironm...

Descripción completa

Detalles Bibliográficos
Autores principales: Sun, Shuo, Lu, Jiangting, Lai, Chaojie, Feng, Zhaojin, Sheng, Xia, Liu, Xianglan, Wang, Yao, Huang, Chengchen, Shen, Zhida, Lv, Qingbo, Fu, Guosheng, Shang, Min
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9279601/
https://www.ncbi.nlm.nih.gov/pubmed/35752958
http://dx.doi.org/10.1111/jcmm.17455
_version_ 1784746434236514304
author Sun, Shuo
Lu, Jiangting
Lai, Chaojie
Feng, Zhaojin
Sheng, Xia
Liu, Xianglan
Wang, Yao
Huang, Chengchen
Shen, Zhida
Lv, Qingbo
Fu, Guosheng
Shang, Min
author_facet Sun, Shuo
Lu, Jiangting
Lai, Chaojie
Feng, Zhaojin
Sheng, Xia
Liu, Xianglan
Wang, Yao
Huang, Chengchen
Shen, Zhida
Lv, Qingbo
Fu, Guosheng
Shang, Min
author_sort Sun, Shuo
collection PubMed
description The relationship between autophagy and immunity has been well studied. However, little is known about the role of autophagy in the immune microenvironment during the progression of dilated cardiomyopathy (DCM). Therefore, this study aims to uncover the effect of autophagy on the immune microenvironment in the context of DCM. By investigating the autophagy gene expression differences between healthy donors and DCM samples, 23 dysregulated autophagy genes were identified. Using a series of bioinformatics methods, 13 DCM‐related autophagy genes were screened and used to construct a risk prediction model, which can well distinguish DCM and healthy samples. Then, the connections between autophagy and immune responses including infiltrated immunocytes, immune reaction gene‐sets and human leukocyte antigen (HLA) genes were systematically evaluated. In addition, two autophagy‐mediated expression patterns in DCM were determined via the unsupervised consensus clustering analysis, and the immune characteristics of different patterns were revealed. In conclusion, our study revealed the strong effect of autophagy on the DCM immune microenvironment and provided new insights to understand the pathogenesis and treatment of DCM.
format Online
Article
Text
id pubmed-9279601
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-92796012022-07-15 Transcriptome analysis uncovers the autophagy‐mediated regulatory patterns of the immune microenvironment in dilated cardiomyopathy Sun, Shuo Lu, Jiangting Lai, Chaojie Feng, Zhaojin Sheng, Xia Liu, Xianglan Wang, Yao Huang, Chengchen Shen, Zhida Lv, Qingbo Fu, Guosheng Shang, Min J Cell Mol Med Original Articles The relationship between autophagy and immunity has been well studied. However, little is known about the role of autophagy in the immune microenvironment during the progression of dilated cardiomyopathy (DCM). Therefore, this study aims to uncover the effect of autophagy on the immune microenvironment in the context of DCM. By investigating the autophagy gene expression differences between healthy donors and DCM samples, 23 dysregulated autophagy genes were identified. Using a series of bioinformatics methods, 13 DCM‐related autophagy genes were screened and used to construct a risk prediction model, which can well distinguish DCM and healthy samples. Then, the connections between autophagy and immune responses including infiltrated immunocytes, immune reaction gene‐sets and human leukocyte antigen (HLA) genes were systematically evaluated. In addition, two autophagy‐mediated expression patterns in DCM were determined via the unsupervised consensus clustering analysis, and the immune characteristics of different patterns were revealed. In conclusion, our study revealed the strong effect of autophagy on the DCM immune microenvironment and provided new insights to understand the pathogenesis and treatment of DCM. John Wiley and Sons Inc. 2022-06-26 2022-07 /pmc/articles/PMC9279601/ /pubmed/35752958 http://dx.doi.org/10.1111/jcmm.17455 Text en © 2022 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Sun, Shuo
Lu, Jiangting
Lai, Chaojie
Feng, Zhaojin
Sheng, Xia
Liu, Xianglan
Wang, Yao
Huang, Chengchen
Shen, Zhida
Lv, Qingbo
Fu, Guosheng
Shang, Min
Transcriptome analysis uncovers the autophagy‐mediated regulatory patterns of the immune microenvironment in dilated cardiomyopathy
title Transcriptome analysis uncovers the autophagy‐mediated regulatory patterns of the immune microenvironment in dilated cardiomyopathy
title_full Transcriptome analysis uncovers the autophagy‐mediated regulatory patterns of the immune microenvironment in dilated cardiomyopathy
title_fullStr Transcriptome analysis uncovers the autophagy‐mediated regulatory patterns of the immune microenvironment in dilated cardiomyopathy
title_full_unstemmed Transcriptome analysis uncovers the autophagy‐mediated regulatory patterns of the immune microenvironment in dilated cardiomyopathy
title_short Transcriptome analysis uncovers the autophagy‐mediated regulatory patterns of the immune microenvironment in dilated cardiomyopathy
title_sort transcriptome analysis uncovers the autophagy‐mediated regulatory patterns of the immune microenvironment in dilated cardiomyopathy
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9279601/
https://www.ncbi.nlm.nih.gov/pubmed/35752958
http://dx.doi.org/10.1111/jcmm.17455
work_keys_str_mv AT sunshuo transcriptomeanalysisuncoverstheautophagymediatedregulatorypatternsoftheimmunemicroenvironmentindilatedcardiomyopathy
AT lujiangting transcriptomeanalysisuncoverstheautophagymediatedregulatorypatternsoftheimmunemicroenvironmentindilatedcardiomyopathy
AT laichaojie transcriptomeanalysisuncoverstheautophagymediatedregulatorypatternsoftheimmunemicroenvironmentindilatedcardiomyopathy
AT fengzhaojin transcriptomeanalysisuncoverstheautophagymediatedregulatorypatternsoftheimmunemicroenvironmentindilatedcardiomyopathy
AT shengxia transcriptomeanalysisuncoverstheautophagymediatedregulatorypatternsoftheimmunemicroenvironmentindilatedcardiomyopathy
AT liuxianglan transcriptomeanalysisuncoverstheautophagymediatedregulatorypatternsoftheimmunemicroenvironmentindilatedcardiomyopathy
AT wangyao transcriptomeanalysisuncoverstheautophagymediatedregulatorypatternsoftheimmunemicroenvironmentindilatedcardiomyopathy
AT huangchengchen transcriptomeanalysisuncoverstheautophagymediatedregulatorypatternsoftheimmunemicroenvironmentindilatedcardiomyopathy
AT shenzhida transcriptomeanalysisuncoverstheautophagymediatedregulatorypatternsoftheimmunemicroenvironmentindilatedcardiomyopathy
AT lvqingbo transcriptomeanalysisuncoverstheautophagymediatedregulatorypatternsoftheimmunemicroenvironmentindilatedcardiomyopathy
AT fuguosheng transcriptomeanalysisuncoverstheautophagymediatedregulatorypatternsoftheimmunemicroenvironmentindilatedcardiomyopathy
AT shangmin transcriptomeanalysisuncoverstheautophagymediatedregulatorypatternsoftheimmunemicroenvironmentindilatedcardiomyopathy