Cargando…

Cumulative Evidence for Relationships Between Multiple Variants in the TERT and CLPTM1L Region and Risk of Cancer and Non-Cancer Disease

BACKGROUND: Genetic studies previously reported that variants in TERT-CLPTM1L genes were related to susceptibility of cancer and non-cancer diseases. However, conclusions were not always concordant. METHODS: We performed meta-analyses to assess correlations between 23 variants within TERT-CLPTM1L re...

Descripción completa

Detalles Bibliográficos
Autores principales: Tian, Jie, Wang, Yan, Dong, Yingxian, Chang, Junke, Wu, Yongming, Chang, Shuai, Che, Guowei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9279858/
https://www.ncbi.nlm.nih.gov/pubmed/35847915
http://dx.doi.org/10.3389/fonc.2022.946039
_version_ 1784746496663486464
author Tian, Jie
Wang, Yan
Dong, Yingxian
Chang, Junke
Wu, Yongming
Chang, Shuai
Che, Guowei
author_facet Tian, Jie
Wang, Yan
Dong, Yingxian
Chang, Junke
Wu, Yongming
Chang, Shuai
Che, Guowei
author_sort Tian, Jie
collection PubMed
description BACKGROUND: Genetic studies previously reported that variants in TERT-CLPTM1L genes were related to susceptibility of cancer and non-cancer diseases. However, conclusions were not always concordant. METHODS: We performed meta-analyses to assess correlations between 23 variants within TERT-CLPTM1L region and susceptibility to 12 cancers and 1 non-cancer disease based on data in 109 papers (involving 139,510 cases and 208,530 controls). Two approaches (false-positive report probability test and Venice criteria) were adopted for assessing the cumulative evidence of significant associations. Current study evaluated the potential role of these variants based on data in Encyclopedia of DNA Elements (ENCODE) Project. RESULTS: Thirteen variants were statistically associated with susceptibility to 11 cancers and 1 non-cancer disease (p < 0.05). Besides, 12 variants with eight cancers and one non-cancer disease were rated as strong evidence (rs2736098, rs401681, and rs402710 in bladder cancer; rs2736100, rs2853691, and rs401681 in esophageal cancer; rs10069690 in gastric cancer; rs2736100 and rs2853676 in glioma; rs2242652, rs2736098, rs2736100, rs2853677, rs31489, rs401681, rs402710, rs465498, and rs4975616 in lung cancer; rs2736100 in idiopathic pulmonary fibrosis and myeloproliferative neoplasms; and rs401681 in pancreatic and skin cancer). According to data from ENCODE and other public databases, 12 variants with strong evidence might fall within putative functional regions. CONCLUSIONS: This paper demonstrated that common variants of TERT-CLPTM1L genes were related to susceptibility to bladder, esophageal, gastric, lung, pancreatic, and skin cancer, as well as to glioma, myeloproliferative neoplasms, and idiopathic pulmonary fibrosis, and, besides, the crucial function of the TERT-CLPTM1L region in the genetic predisposition to human diseases is elucidated.
format Online
Article
Text
id pubmed-9279858
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-92798582022-07-15 Cumulative Evidence for Relationships Between Multiple Variants in the TERT and CLPTM1L Region and Risk of Cancer and Non-Cancer Disease Tian, Jie Wang, Yan Dong, Yingxian Chang, Junke Wu, Yongming Chang, Shuai Che, Guowei Front Oncol Oncology BACKGROUND: Genetic studies previously reported that variants in TERT-CLPTM1L genes were related to susceptibility of cancer and non-cancer diseases. However, conclusions were not always concordant. METHODS: We performed meta-analyses to assess correlations between 23 variants within TERT-CLPTM1L region and susceptibility to 12 cancers and 1 non-cancer disease based on data in 109 papers (involving 139,510 cases and 208,530 controls). Two approaches (false-positive report probability test and Venice criteria) were adopted for assessing the cumulative evidence of significant associations. Current study evaluated the potential role of these variants based on data in Encyclopedia of DNA Elements (ENCODE) Project. RESULTS: Thirteen variants were statistically associated with susceptibility to 11 cancers and 1 non-cancer disease (p < 0.05). Besides, 12 variants with eight cancers and one non-cancer disease were rated as strong evidence (rs2736098, rs401681, and rs402710 in bladder cancer; rs2736100, rs2853691, and rs401681 in esophageal cancer; rs10069690 in gastric cancer; rs2736100 and rs2853676 in glioma; rs2242652, rs2736098, rs2736100, rs2853677, rs31489, rs401681, rs402710, rs465498, and rs4975616 in lung cancer; rs2736100 in idiopathic pulmonary fibrosis and myeloproliferative neoplasms; and rs401681 in pancreatic and skin cancer). According to data from ENCODE and other public databases, 12 variants with strong evidence might fall within putative functional regions. CONCLUSIONS: This paper demonstrated that common variants of TERT-CLPTM1L genes were related to susceptibility to bladder, esophageal, gastric, lung, pancreatic, and skin cancer, as well as to glioma, myeloproliferative neoplasms, and idiopathic pulmonary fibrosis, and, besides, the crucial function of the TERT-CLPTM1L region in the genetic predisposition to human diseases is elucidated. Frontiers Media S.A. 2022-06-30 /pmc/articles/PMC9279858/ /pubmed/35847915 http://dx.doi.org/10.3389/fonc.2022.946039 Text en Copyright © 2022 Tian, Wang, Dong, Chang, Wu, Chang and Che https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Tian, Jie
Wang, Yan
Dong, Yingxian
Chang, Junke
Wu, Yongming
Chang, Shuai
Che, Guowei
Cumulative Evidence for Relationships Between Multiple Variants in the TERT and CLPTM1L Region and Risk of Cancer and Non-Cancer Disease
title Cumulative Evidence for Relationships Between Multiple Variants in the TERT and CLPTM1L Region and Risk of Cancer and Non-Cancer Disease
title_full Cumulative Evidence for Relationships Between Multiple Variants in the TERT and CLPTM1L Region and Risk of Cancer and Non-Cancer Disease
title_fullStr Cumulative Evidence for Relationships Between Multiple Variants in the TERT and CLPTM1L Region and Risk of Cancer and Non-Cancer Disease
title_full_unstemmed Cumulative Evidence for Relationships Between Multiple Variants in the TERT and CLPTM1L Region and Risk of Cancer and Non-Cancer Disease
title_short Cumulative Evidence for Relationships Between Multiple Variants in the TERT and CLPTM1L Region and Risk of Cancer and Non-Cancer Disease
title_sort cumulative evidence for relationships between multiple variants in the tert and clptm1l region and risk of cancer and non-cancer disease
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9279858/
https://www.ncbi.nlm.nih.gov/pubmed/35847915
http://dx.doi.org/10.3389/fonc.2022.946039
work_keys_str_mv AT tianjie cumulativeevidenceforrelationshipsbetweenmultiplevariantsinthetertandclptm1lregionandriskofcancerandnoncancerdisease
AT wangyan cumulativeevidenceforrelationshipsbetweenmultiplevariantsinthetertandclptm1lregionandriskofcancerandnoncancerdisease
AT dongyingxian cumulativeevidenceforrelationshipsbetweenmultiplevariantsinthetertandclptm1lregionandriskofcancerandnoncancerdisease
AT changjunke cumulativeevidenceforrelationshipsbetweenmultiplevariantsinthetertandclptm1lregionandriskofcancerandnoncancerdisease
AT wuyongming cumulativeevidenceforrelationshipsbetweenmultiplevariantsinthetertandclptm1lregionandriskofcancerandnoncancerdisease
AT changshuai cumulativeevidenceforrelationshipsbetweenmultiplevariantsinthetertandclptm1lregionandriskofcancerandnoncancerdisease
AT cheguowei cumulativeevidenceforrelationshipsbetweenmultiplevariantsinthetertandclptm1lregionandriskofcancerandnoncancerdisease